Gene omics information

Query gene ID	Contig14945_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	95.2	Contig14945_at	Contig14945	-	-	8e-36	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	S.X.	H.G.	Please select
0.29	35.5	Contig16040_at	Contig16040	-	-	2e-4	At4g31550	WRKY11	S.X.	H.G.	Please select
0.21	22.6	Contig13841_at	Contig13841	-	-	2e+0	At2g34610	unknown protein	S.X.	H.G.	Please select
0.11	9.4	Contig20248_at	Contig20248	-	-	5e+0	At3g16880	F-box protein-related	S.X.	H.G.	Please select
0.08	6.5	HB03M23r_at	HB03M23r	-	-	5e+0	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	S.X.	H.G.	Please select
0.06	4.8	Contig13863_at	Contig13863	-	-	9e-1	At1g04778	unknown protein	S.X.	H.G.	Please select
0.04	3.4	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.02	1.8	Contig15481_at	Contig15481	-	-	2e+0	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.0	99.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
10.4	99.2	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
10.0	99.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
9.7	99.0	GSM160464	drought control rep1	GSE6990	Barley drought stress
8.1	98.7	GSM160744	drought control rep2	GSE6990	Barley drought stress
7.5	98.6	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.5	98.6	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.6	98.2	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.5	98.2	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	3e-15	81	HS05N23u_x_at	HS05N23u	-	-	4e+0	At3g50610	unknown protein	C.G.	S.X.	Please select
0.04	3e-3	42	HT03K14r_s_at	HT03K14r	-	-	2e-1	At5g02060	integral membrane protein, putative	C.G.	S.X.	Please select
0.04	3e-3	42	HT03K14r_at	HT03K14r	-	-	2e-1	At5g02060	integral membrane protein, putative	C.G.	S.X.	Please select
0.04	6e-1	34	S0000200082G03F1_at	S0000200082G03F1	-	-	8e+0	At4g02380	SAG21 (SENESCENCE-ASSOCIATED GENE 21)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig10741_at	Contig10741	-	-	3e+0	At2g34110	-	C.G.	S.X.	Please select
0.03	3e+0	32	Contig25476_at	Contig25476	-	-	1e+0	At5g63900	PHD finger family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Contig21486_at	Contig21486	-	-	5e-3	At5g55430	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Contig15600_at	Contig15600	-	-	2e+0	At4g20760	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig16221_at	Contig16221	-	-	1e-1	At1g02000	GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	8e-36	151	Arabidopsis thaliana	At4g16370	827332	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	Encodes an oligopeptide transporter involved in metal homeostasis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	34	Glycine max	PsAffx.psMC003xP07f_at	PsAffx.psMC003xP07f	-	-	9e+0	At4g28440	DNA-binding protein-related	C.G.	S.X.	Please select
0.22	3e-145	515	Oryza sativa	Os.4978.1.S2_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	5e-10	65	Populus trichocarpa	PtpAffx.21103.1.S1_at	CV262518	oligopeptide transporter OPT family	-	7e-19	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	0	872	Triticum aestivum	Ta.1984.1.S1_at	BG604569	-	-	5e-32	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1622645_at	CF208259	hypothetical protein LOC100245405	-	1e-83	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	C.G.	S.X.	Please select
0.23	2e-139	494	Zea mays	Zm.16913.1.S1_at	BQ619268	GT1 protein	-	2e-24	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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