Gene omics information

Query gene ID	Contig14919_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig14919_at	Contig14919	-	-	8e-34	At3g61790	seven in absentia (SINA) family protein	S.X.	H.G.	Please select
0.80	92.5	Contig8578_at	Contig8578	-	-	1e-1	At3g50330	HEC2 (HECATE 2)	S.X.	H.G.	Please select
0.40	53.1	HV_CEb0001N22r2_x_at	HV_CEb0001N22r2	-	-	3e+0	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	S.X.	H.G.	Please select
0.40	53.1	Contig6154_s_at	Contig6154	-	-	2e-5	At3g59140	ATMRP14	S.X.	H.G.	Please select
0.38	49.5	Contig11733_at	Contig11733	-	-	3e-2	At2g22145	-	S.X.	H.G.	Please select
0.38	49.5	Contig14230_at	Contig14230	-	-	5e-1	At5g01430	Got1-like family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
68.4	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
56.2	100.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.1	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	0	670	Contig14690_at	Contig14690	-	-	4e-27	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.50	1e-126	452	Contig6334_at	Contig6334	-	-	6e-57	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.19	2e-20	99	Contig10293_at	Contig10293	-	-	6e-17	At4g27880	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.09	2e-17	89	Contig10787_at	Contig10787	-	-	5e-5	At4g27880	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig2779_at	Contig2779	-	-	2e-6	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.02	3e-1	36	M55684_at	M55684	-	-	1e-1	At4g17260	L-lactate dehydrogenase, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Contig14413_at	Contig14413	-	-	1e-1	At4g12780	heat shock protein binding	C.G.	S.X.	Please select
0.01	3e-1	36	Contig8160_at	Contig8160	-	-	2e-4	At4g23860	PHD finger protein-related	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9243_at	Contig9243	-	-	2e-4	At4g27470	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	8e-34	145	Arabidopsis thaliana	At3g61790	825352	seven in absentia (SINA) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	6e-26	119	Glycine max	GmaAffx.83307.2.S1_at	CA801807	-	-	2e-37	At4g27880	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.67	0	983	Oryza sativa	Os01g0234900	NM_188653.1	-	Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2	1e-38	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	4e-27	123	Populus trichocarpa	PtpAffx.283.6.S1_a_at	CV229539	hypothetical protein	-	8e-47	At4g27880	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	0	1398	Triticum aestivum	Ta.1658.1.S1_at	CA597357	-	-	1e-27	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.48	4e-76	284	Vitis vinifera	1609250_at	Y18471.1	SINA1p	-	2e-60	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.50	3e-161	567	Zea mays	Zm.13813.1.S1_at	CF011226	hypothetical protein LOC100272771	-	7e-26	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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