Gene omics information

Query gene ID	Contig14904_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig14904_at	Contig14904	-	-	2e+0	At2g28330	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.43	56.4	Contig8332_at	Contig8332	-	-	2e-8	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	S.X.	H.G.	Please select
0.31	38.6	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.31	38.6	HV_CEa0010M13r2_s_at	HV_CEa0010M13r2	-	-	9e-1	At4g01670	unknown protein	S.X.	H.G.	Please select
0.30	37.0	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig13215_at	Contig13215	-	-	3e-10	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
8.0	98.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
6.8	98.3	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.4	97.5	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.1	97.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
4.1	96.2	GSM160826	19% SWC rep3	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-3	42	Contig3891_s_at	Contig3891	-	-	1e-7	At3g50210	2-oxoacid-dependent oxidase, putative	C.G.	S.X.	Please select
0.02	1e-2	40	Contig14020_at	Contig14020	-	-	4e-7	At3g18170	transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.02	6e-2	38	Contig6892_s_at	Contig6892	-	-	1e+0	At5g19810	proline-rich extensin-like family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig6438_s_at	Contig6438	-	-	6e-1	At2g44581	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	6e-2	38	HV13D09r_at	HV13D09r	-	-	4e+0	At5g36960	unknown protein	C.G.	S.X.	Please select
0.03	6e-2	38	HC108A06_SK_at	HC108A06_SK	-	-	8e-1	At5g58280	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.03	6e-2	38	Contig21748_s_at	Contig21748	-	-	9e+0	At5g02580	unknown protein	C.G.	S.X.	Please select
0.01	6e-2	38	Contig7765_at	Contig7765	-	-	5e-55	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	C.G.	S.X.	Please select
0.02	6e-2	38	Contig716_at	Contig716	-	-	1e+0	At3g02840	immediate-early fungal elicitor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At2g28330	817380	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-2	42	Glycine max	PsAffx.C38000024_at	PsAffx.C38000024	-	-	3e+0	At4g36268	unknown protein	C.G.	S.X.	Please select
0.03	6e-2	40	Oryza sativa	Os.12440.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.715.1.A1_s_at	CV276827	hypothetical protein	-	9e-5	At3g19170	ATPREP1 (PRESEQUENCE PROTEASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-4	48	Triticum aestivum	Ta.22357.1.S1_s_at	CA596540	-	-	7e-2	At2g36620	RPL24A (ribosomal protein L24)	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1613742_at	CB342523	-	-	4e+0	At4g39403	PLS (POLARIS)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.890.2.A1_a_at	CA400673	GSDL-motif lipase	-	5e+0	At5g55710	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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