Gene omics information

Query gene ID	Contig14848_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig14848_at	Contig14848	-	-	5e+0	At3g55240	-	S.X.	H.G.	Please select
0.60	77.3	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	S.X.	H.G.	Please select
0.47	62.2	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	S.X.	H.G.	Please select
0.44	58.9	Contig24850_at	Contig24850	-	-	5e+0	At2g12462	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	S.X.	H.G.	Please select
0.36	47.1	Contig12883_at	Contig12883	-	-	9e-3	At3g55790	unknown protein	S.X.	H.G.	Please select
0.28	35.5	Contig1146_at	Contig1146	-	-	8e-3	At3g09480	histone H2B, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.4	99.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
33.5	99.9	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
32.0	99.9	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
30.6	99.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
26.9	99.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
26.7	99.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
14.7	99.5	GSM71153	Barke stress and unstress replicate 4	GSE3170	Barley single feature polymorphisms and drought stress gene expression
13.4	99.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
13.2	99.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
11.1	99.2	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	1e-168	591	Contig21242_at	Contig21242	-	-	1e+0	At1g27435	unknown protein	C.G.	S.X.	Please select
0.74	6e-75	280	Contig22092_at	Contig22092	-	-	1e+0	At1g27435	unknown protein	C.G.	S.X.	Please select
0.21	3e-9	61	Contig3588_s_at	Contig3588	-	-	1e-1	At5g05820	phosphate translocator-related	C.G.	S.X.	Please select
0.24	4e-8	57	Contig4973_s_at	Contig4973	-	-	6e+0	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.20	1e-2	40	HVSMEb0003G21r2_s_at	HVSMEb0003G21r2	-	-	3e+0	At3g23390	60S ribosomal protein L36a/L44 (RPL36aA)	C.G.	S.X.	Please select
0.03	6e-1	34	Contig970_at	Contig970	-	-	9e-2	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.03	6e-1	34	Contig553_s_at	Contig553	-	-	4e+0	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig18237_at	Contig18237	-	-	2e+0	At5g19960	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	6e-1	34	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At3g55240	824690	-	Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	Gma.576.1.S1_at	BM732317	-	-	2e+0	At5g35470	unknown protein	C.G.	S.X.	Please select
0.10	3e-3	44	Oryza sativa	Os05g0226900	AF337054.1	-	Conserved hypothetical protein	3e-3	At2g43970	La domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.82250.1.A1_at	CV254572	-	-	3e+0	At1g15260	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	0	634	Triticum aestivum	Ta.28136.1.S1_x_at	CK160740	-	-	1e-1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1618948_at	CD715772	-	-	3e-8	At1g07010	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please select
0.11	6e-4	44	Zea mays	Zm.13367.1.S1_at	Y17332.1	proline-rich protein	-	5e-2	At1g12610	DDF1 (DWARF AND DELAYED FLOWERING 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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