Gene omics information

Query gene ID	Contig14797_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	61.0	Contig14797_at	Contig14797	-	-	9e+0	At5g05610	AL1 (ALFIN-LIKE 1)	S.X.	H.G.	Please select
0.44	58.9	Contig25003_at	Contig25003	-	-	2e-1	At2g45520	unknown protein	S.X.	H.G.	Please select
0.32	40.3	HK01E08r_s_at	HK01E08r	-	-	4e+0	At2g27340	-	S.X.	H.G.	Please select
0.21	22.6	Contig16552_at	Contig16552	-	-	5e+0	At5g49440	unknown protein	S.X.	H.G.	Please select
0.13	11.6	Contig14168_s_at	Contig14168	-	-	4e-18	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	S.X.	H.G.	Please select
0.07	5.8	Contig19276_at	Contig19276	-	-	2e+0	At5g17120	-	S.X.	H.G.	Please select
0.06	4.8	Contig4226_at	Contig4226	-	-	1e-11	At1g11360	universal stress protein (USP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.9	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
5.4	97.5	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.1	96.2	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9	95.8	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM398272	HS41-1_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM398265	HS41-1_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.5	95.1	GSM363468	10 mM B(OH)3 treatment (10B) - rep3	GSE14521	Late response to boron toxicity in barley leaves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	HT08N23r_at	HT08N23r	-	-	1e+0	At3g08700	UBC12 (ubiquitin-conjugating enzyme 12)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7066_at	Contig7066	-	-	2e-23	At2g40730	HEAT repeat-containing protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig10569_at	Contig10569	-	-	3e-19	At1g66750	CAK4 (CDK-ACTIVATING KINASE 4)	C.G.	S.X.	Please select
0.01	4e+0	32	AF414177_at	AF414177	-	-	3e-2	At3g61230	LIM domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig19563_at	Contig19563	-	-	2e+0	At5g07640	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig7503_at	Contig7503	-	-	7e-14	At4g13400	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig7425_at	Contig7425	-	-	2e-41	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select
0.02	2e+1	30	Contig5856_at	Contig5856	-	-	2e+0	At4g24420	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	2e+1	30	Contig5734_at	Contig5734	-	-	7e+0	At4g37409	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e+0	32	Arabidopsis thaliana	At5g05610	830444	AL1 (ALFIN-LIKE 1)	AL1 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	34	Glycine max	Gma.14198.1.A1_at	CD417338	-	-	6e+0	At4g08360	KOW domain-containing protein	C.G.	S.X.	Please select
0.09	2e-63	244	Oryza sativa	Os02g0639000	AK067293.1	-	Double-stranded RNA binding domain containingprotein	9e-12	At4g21670	CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.212119.1.S1_at	pmrna23767	hypothetical protein	-	3e+0	At5g01790	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	3e-15	83	Triticum aestivum	Ta.30398.1.S1_at	CK207462	-	-	1e+0	At5g64810	WRKY51	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1620783_at	CF212184	-	-	8e-2	At4g38140	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.15	1e-33	143	Zea mays	Zm.12965.1.A1_at	CA402509	-	-	2e+0	At5g28070	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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