Gene omics information

Query gene ID	Contig14780_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig14780_at	Contig14780	-	-	3e-1	At2g35960	NHL12	S.X.	H.G.	Please select
0.44	58.9	HU05P16u_s_at	HU05P16u	-	-	4e+0	At3g29670	transferase family protein	S.X.	H.G.	Please select
0.42	55.2	Contig21168_at	Contig21168	-	-	2e+0	At2g39550	PGGT-I	S.X.	H.G.	Please select
0.42	55.2	Contig8938_at	Contig8938	-	-	7e-9	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please select
0.40	53.1	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	S.X.	H.G.	Please select
0.20	21.1	Contig18385_at	Contig18385	-	-	2e+0	Atmg01170	-	S.X.	H.G.	Please select
0.16	15.3	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	99.0	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.1	98.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
8.8	98.9	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
8.3	98.8	GSM372976	genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.2	98.7	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.9	98.7	GSM372958	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.7	98.6	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
7.6	98.6	GSM372940	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
7.0	98.4	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Contig12212_at	Contig12212	-	-	4e-8	At1g32100	PRR1 (PINORESINOL REDUCTASE 1)	C.G.	S.X.	Please select
0.05	1e-2	40	Contig13380_at	Contig13380	-	-	2e-2	At4g19270	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig8045_at	Contig8045	-	-	2e-1	At5g58200	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig1938_s_at	Contig1938	-	-	2e-49	At4g17390	60S ribosomal protein L15 (RPL15B)	C.G.	S.X.	Please select
0.02	1e-2	40	Contig1488_at	Contig1488	-	-	8e-1	At5g39320	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please select
0.02	4e-2	38	Contig5704_at	Contig5704	-	-	2e-1	At1g49640	hydrolase	C.G.	S.X.	Please select
0.03	4e-2	38	Contig5415_at	Contig5415	-	-	1e+0	At1g51140	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig5186_at	Contig5186	-	-	1e-25	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select
0.03	4e-2	38	Contig15445_at	Contig15445	-	-	3e-2	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At2g35960	818169	NHL12	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	PsAffx.psHA007iF03r_s_at	PsAffx.psHA007iF03r	-	-	1e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.32	4e-30	133	Oryza sativa	Os03g0747700	AK058795.1	-	Conserved hypothetical protein	4e-1	At5g65880	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.212770.1.S1_at	pmrna24990	hypothetical protein	-	7e-9	At1g27510	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-2	38	Triticum aestivum	TaAffx.80625.1.S1_x_at	CA694659	-	-	1e-6	At3g55750	60S ribosomal protein L35a (RPL35aD)	C.G.	S.X.	Please select
0.04	3e-2	38	Vitis vinifera	1615448_at	CF568935	-	-	1e-61	At5g59910	HTB4	C.G.	S.X.	Please select
0.04	1e-2	40	Zea mays	ZmAffx.1177.1.S1_at	AW927462	-	-	7e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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