Gene omics information

Query gene ID	Contig1470_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	S.X.	H.G.	Please select
0.67	84.7	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	S.X.	H.G.	Please select
0.50	66.9	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig14981_at	Contig14981	-	-	5e-1	At1g25330	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.31	38.6	Contig10922_at	Contig10922	-	-	3e-16	At3g48380	-	S.X.	H.G.	Please select
0.27	32.1	Contig14078_at	Contig14078	-	-	2e-21	At4g01800	preprotein translocase secA subunit, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
59.6	100.0	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
51.7	100.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
43.5	99.9	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
43.5	99.9	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
40.1	99.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
40.1	99.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
38.8	99.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
38.8	99.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
20.5	99.7	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1390	Contig1470_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select
0.98	0	1390	Contig1470_x_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select
0.92	0	1094	Contig1461_x_at	Contig1461	-	-	1e+0	At1g70280	NHL repeat-containing protein	C.G.	S.X.	Please select
0.92	0	1094	Contig1461_at	Contig1461	-	-	1e+0	At1g70280	NHL repeat-containing protein	C.G.	S.X.	Please select
0.91	0	1025	Contig1464_x_at	Contig1464	-	-	4e-1	At3g14180	transcription factor	C.G.	S.X.	Please select
0.70	3e-80	297	Contig1460_x_at	Contig1460	-	-	6e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	C.G.	S.X.	Please select
0.70	2e-68	258	Contig1458_x_at	Contig1458	-	-	6e-3	At3g03460	unknown protein	C.G.	S.X.	Please select
0.62	8e-56	216	Contig1466_s_at	Contig1466	-	-	5e-3	At3g03460	unknown protein	C.G.	S.X.	Please select
0.34	8e-50	196	HF18A22r_s_at	HF18A22r	-	-	9e-8	At5g14780	FDH (FORMATE DEHYDROGENASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-3	42	Arabidopsis thaliana	At4g00610	827994	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:chloroplast;MOFPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	Gma.9697.1.S1_at	CA801318	-	-	4e-15	At5g51810	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	C.G.	S.X.	Please select
0.04	4e-2	40	Oryza sativa	Os06g0236900	AK060374.1	-	-	5e-2	At5g24840	tRNA (guanine-N7-)-methyltransferase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.69294.2.S1_s_at	AJ768330	hypothetical protein	-	8e-5	At1g55140	RNA binding / ribonuclease III	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	8e-104	377	Triticum aestivum	TaAffx.42864.1.S1_at	CA713323	-	-	6e+0	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1612194_at	CD799692	hypothetical protein LOC100263534	-	7e-2	At5g14420	RGLG2 (RING domain Ligase2)	C.G.	S.X.	Please select
0.04	4e-2	38	Zea mays	Zm.34.7.A1_x_at	CD447935	Hypothetical protein LOC100192755	-	7e+0	At5g60330	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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