Gene omics information

Query gene ID	Contig14638_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig14638_at	Contig14638	-	-	4e-35	At4g30800	40S ribosomal protein S11 (RPS11B)	S.X.	H.G.	Please select
0.95	99.2	Contig7120_at	Contig7120	-	-	4e-18	At1g55880	pyridoxal-5'-phosphate-dependent enzyme, beta family protein	S.X.	H.G.	Please select
0.84	94.3	Contig7301_at	Contig7301	-	-	3e-1	At5g26070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.82	93.1	Contig4455_at	Contig4455	-	-	5e-1	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please select
0.80	92.5	Contig15033_at	Contig15033	-	-	2e-16	At3g17850	protein kinase, putative	S.X.	H.G.	Please select
0.80	92.5	Contig6638_at	Contig6638	-	-	1e+0	At1g21880	LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)	S.X.	H.G.	Please select
0.76	89.8	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	S.X.	H.G.	Please select
0.72	87.4	Contig3480_at	Contig3480	-	-	4e-1	At5g16660	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	S.X.	H.G.	Please select
0.59	75.8	Contig4453_at	Contig4453	-	-	3e-3	At1g14700	PAP3 (PURPLE ACID PHOSPHATASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.6	99.5	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.8	99.3	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
10.5	99.2	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.1	99.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.7	99.0	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.3	99.0	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.3	99.0	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.9	98.9	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.8	98.9	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.3	98.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-9	63	EBro08_SQ003_C13_at	EBro08_SQ003_C13	-	-	7e-5	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	C.G.	S.X.	Please select
0.07	2e-8	59	EBes01_SQ003_E13_s_at	EBes01_SQ003_E13	-	-	8e-1	At4g30800	40S ribosomal protein S11 (RPS11B)	C.G.	S.X.	Please select
0.09	6e-5	48	baal1j07_at	baal1j07	-	-	5e-15	At4g30800	40S ribosomal protein S11 (RPS11B)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig14582_at	Contig14582	-	-	1e-4	At1g53645	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig12502_at	Contig12502	-	-	2e-11	At2g22480	PFK5 (PHOSPHOFRUCTOKINASE 5)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig18464_at	Contig18464	-	-	2e+0	At3g18450	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig11519_at	Contig11519	-	-	2e-4	At1g66680	AR401	C.G.	S.X.	Please select
0.03	8e-1	34	EBro03_SQ006_A01_at	EBro03_SQ006_A01	-	-	1e+1	At5g54930	AT hook motif-containing protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig9230_s_at	Contig9230	-	-	2e+0	At1g78410	VQ motif-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	4e-35	149	Arabidopsis thaliana	At4g30800	829203	40S ribosomal protein S11 (RPS11B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	5e-51	202	Glycine max	GmaAffx.92522.1.S1_at	CF808247	Ribosomal protein S11 mRNA, 3' end	-	1e-24	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	C.G.	S.X.	Please select
0.45	9e-118	424	Oryza sativa	Os04g0502300	AK120520.1	-	40S ribosomal protein S11	6e-59	At3g48930	EMB1080 (embryo defective 1080)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	5e-54	212	Populus trichocarpa	Ptp.5621.1.S1_s_at	CV231534	hypothetical protein	-	2e-89	At3g48930	EMB1080 (embryo defective 1080)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	870	Triticum aestivum	Ta.9059.1.S1_a_at	BJ231303	-	-	9e-18	At3g48930	EMB1080 (embryo defective 1080)	C.G.	S.X.	Please select
0.28	5e-32	137	Vitis vinifera	1609509_at	CF206236.1	-	-	1e-50	At3g48930	EMB1080 (embryo defective 1080)	C.G.	S.X.	Please select
0.41	2e-78	291	Zea mays	Zm.2157.7.S1_at	CF019402	ribosomal protein S11	-	1e-38	At4g30800	40S ribosomal protein S11 (RPS11B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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