Gene omics information

Query gene ID Contig145_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6077.3Contig145_atContig145--4e-10At1g08880H2AXAS.X.H.G.
0.6784.7Contig12332_atContig12332--4e+0At3g50410OBP1 (OBF BINDING PROTEIN 1)S.X.H.G.
0.6784.7Contig807_s_atContig807--6e-53At1g55490CPN60B (CHAPERONIN 60 BETA)S.X.H.G.
0.4053.1HB22L02r_atHB22L02r--1e+0At1g44770unknown proteinS.X.H.G.
0.4053.1Contig26369_atContig26369--4e+0At4g02620vacuolar ATPase subunit F family proteinS.X.H.G.
0.3342.6Contig11177_atContig11177--5e-1At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.099.5GSM6890227 h control replicate 2GSE3097Barley1 salinity stress study
14.399.5GSM688903 h control replicate 2GSE3097Barley1 salinity stress study
11.499.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
11.499.3GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.199.1GSM688913 h control replicate 3GSE3097Barley1 salinity stress study
9.499.0GSM688968 h control replicate 2GSE3097Barley1 salinity stress study
8.998.9GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.698.8GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.598.8GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seeds
8.598.8GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9801281Contig145_x_atContig145--4e-10At1g08880H2AXAC.G.S.X.
0.9501082Contig167_x_atContig167--2e-8At1g08880H2AXAC.G.S.X.
0.860866Contig571_atContig571--8e-2At4g27230HTA2 (histone H2A)C.G.S.X.
0.720737Contig440_s_atContig440--4e-10At1g08880H2AXAC.G.S.X.
0.660730Contig671_atContig671--2e-5At1g08880H2AXAC.G.S.X.
0.670726Contig137_x_atContig137--1e-6At1g08880H2AXAC.G.S.X.
0.610722Contig85_x_atContig85--2e-6At1g08880H2AXAC.G.S.X.
0.640718Contig158_s_atContig158--2e-5At1g08880H2AXAC.G.S.X.
0.740708Contig443_atContig443--2e-8At4g27230HTA2 (histone H2A)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.174e-1065Arabidopsis thalianaAt1g08880837409H2AXAEncodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.---C.G.S.X.
0.396e-25115Glycine maxPsAffx.C4000035_atPsAffx.C4000035--4e+0At5g59870HTA6C.G.S.X.
0.442e-99363Oryza sativaOs03g0279200CA753594-Histone H2A1e-7At5g02560HTA12C.G.S.X.
0.061e-448Populus trichocarpaPtp.6807.1.S1_atDN499732histone 2-6e-27At1g08880H2AXAC.G.S.X.
0.750739Triticum aestivumTa.29542.1.S1_x_atD38087.1protein H2A-1e-10At1g08880H2AXAC.G.S.X.
0.211e-1995Vitis vinifera1608056_atCF511408hypothetical protein LOC100254490-4e-31At1g08880H2AXAC.G.S.X.
0.433e-107387Zea maysZm.14706.1.S1_atAY103710.1--2e-3At4g27230HTA2 (histone H2A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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