Gene omics information

Query gene ID	Contig145_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig145_at	Contig145	-	-	4e-10	At1g08880	H2AXA	S.X.	H.G.	Please select
0.67	84.7	Contig12332_at	Contig12332	-	-	4e+0	At3g50410	OBP1 (OBF BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.67	84.7	Contig807_s_at	Contig807	-	-	6e-53	At1g55490	CPN60B (CHAPERONIN 60 BETA)	S.X.	H.G.	Please select
0.40	53.1	HB22L02r_at	HB22L02r	-	-	1e+0	At1g44770	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	S.X.	H.G.	Please select
0.33	42.6	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.0	99.5	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study
14.3	99.5	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
11.4	99.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.4	99.3	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.1	99.1	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
9.4	99.0	GSM68896	8 h control replicate 2	GSE3097	Barley1 salinity stress study
8.9	98.9	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.6	98.8	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.5	98.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.5	98.8	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1281	Contig145_x_at	Contig145	-	-	4e-10	At1g08880	H2AXA	C.G.	S.X.	Please select
0.95	0	1082	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	C.G.	S.X.	Please select
0.86	0	866	Contig571_at	Contig571	-	-	8e-2	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.72	0	737	Contig440_s_at	Contig440	-	-	4e-10	At1g08880	H2AXA	C.G.	S.X.	Please select
0.66	0	730	Contig671_at	Contig671	-	-	2e-5	At1g08880	H2AXA	C.G.	S.X.	Please select
0.67	0	726	Contig137_x_at	Contig137	-	-	1e-6	At1g08880	H2AXA	C.G.	S.X.	Please select
0.61	0	722	Contig85_x_at	Contig85	-	-	2e-6	At1g08880	H2AXA	C.G.	S.X.	Please select
0.64	0	718	Contig158_s_at	Contig158	-	-	2e-5	At1g08880	H2AXA	C.G.	S.X.	Please select
0.74	0	708	Contig443_at	Contig443	-	-	2e-8	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	4e-10	65	Arabidopsis thaliana	At1g08880	837409	H2AXA	Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	6e-25	115	Glycine max	PsAffx.C4000035_at	PsAffx.C4000035	-	-	4e+0	At5g59870	HTA6	C.G.	S.X.	Please select
0.44	2e-99	363	Oryza sativa	Os03g0279200	CA753594	-	Histone H2A	1e-7	At5g02560	HTA12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-4	48	Populus trichocarpa	Ptp.6807.1.S1_at	DN499732	histone 2	-	6e-27	At1g08880	H2AXA	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	739	Triticum aestivum	Ta.29542.1.S1_x_at	D38087.1	protein H2A	-	1e-10	At1g08880	H2AXA	C.G.	S.X.	Please select
0.21	1e-19	95	Vitis vinifera	1608056_at	CF511408	hypothetical protein LOC100254490	-	4e-31	At1g08880	H2AXA	C.G.	S.X.	Please select
0.43	3e-107	387	Zea mays	Zm.14706.1.S1_at	AY103710.1	-	-	2e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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