Gene omics information

Query gene ID	Contig14599_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig14599_at	Contig14599	-	-	3e-2	At3g17160	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.73	88.7	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.57	74.9	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	S.X.	H.G.	Please select
0.50	66.9	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.5	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
5.2	97.4	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.0	96.0	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-5	50	Contig14144_at	Contig14144	-	-	4e-2	At3g19900	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig2753_at	Contig2753	-	-	7e-1	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	C.G.	S.X.	Please select
0.02	6e-2	38	Contig3907_at	Contig3907	-	-	6e-10	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.01	6e-2	38	Contig9776_at	Contig9776	-	-	3e-7	At2g34750	RNA polymerase I specific transcription initiation factor RRN3 family protein	C.G.	S.X.	Please select
0.01	6e-2	38	Contig8872_at	Contig8872	-	-	1e-5	At5g57660	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.01	6e-2	38	Contig8399_at	Contig8399	-	-	2e-2	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig18384_at	Contig18384	-	-	2e+0	At1g56233	-	C.G.	S.X.	Please select
0.02	2e-1	36	Contig21558_at	Contig21558	-	-	5e-1	At5g56800	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-2	40	Arabidopsis thaliana	At3g17160	820973	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-3	44	Glycine max	Gma.8157.1.S1_at	CD400228	-	-	6e-7	At3g53630	unknown protein	C.G.	S.X.	Please select
0.46	3e-96	353	Oryza sativa	Os03g0279600	AK061080.1	-	Hypothetical protein	6e-1	At1g12665	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.217109.1.S1_at	pmrna32251	hypothetical protein	-	7e-2	At5g28610	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	6e-50	198	Triticum aestivum	TaAffx.84998.1.S1_at	CA626492	-	-	6e-2	At3g27830	RPL12-A (RIBOSOMAL PROTEIN L12-A)	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1620965_at	CB970864	-	-	7e-14	At2g34070	unknown protein	C.G.	S.X.	Please select
0.25	2e-66	252	Zea mays	Zm.12326.1.S1_at	BQ703243	hypothetical protein LOC100278585	-	8e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage