Gene omics information

Query gene ID	Contig14554_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	95.2	Contig14554_at	Contig14554	-	-	7e+0	At5g06240	emb2735 (embryo defective 2735)	S.X.	H.G.	Please select
0.81	92.8	Contig21939_at	Contig21939	-	-	5e+0	At5g17523	-	S.X.	H.G.	Please select
0.78	91.2	Contig16930_at	Contig16930	-	-	1e+0	At3g20430	unknown protein	S.X.	H.G.	Please select
0.75	89.5	Contig7450_at	Contig7450	-	-	7e+0	At3g21055	PSBTN (photosystem II subunit T)	S.X.	H.G.	Please select
0.75	89.5	Contig7448_s_at	Contig7448	-	-	1e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	S.X.	H.G.	Please select
0.71	87.1	HZ48K22r_at	HZ48K22r	-	-	3e-13	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.71	87.1	HW03J01T_at	HW03J01T	-	-	3e-1	At1g78130	UNE2 (unfertilized embryo sac 2)	S.X.	H.G.	Please select
0.68	85.1	HVSMEf0006B06f_at	HVSMEf0006B06f	-	-	1e-2	At4g30380	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	S.X.	H.G.	Please select
0.68	85.1	Contig13869_at	Contig13869	-	-	7e-10	At1g54610	protein kinase family protein	S.X.	H.G.	Please select
0.67	84.7	Contig2446_at	Contig2446	-	-	1e+0	At2g37480	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.7	99.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
16.6	99.6	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.6	99.3	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.9	99.2	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.5	99.2	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.9	99.1	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.7	99.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.7	98.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.0	98.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	1134	Contig14554_s_at	Contig14554	-	-	7e+0	At5g06240	emb2735 (embryo defective 2735)	C.G.	S.X.	Please select
0.02	4e-3	42	Contig7294_at	Contig7294	-	-	2e-13	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	C.G.	S.X.	Please select
0.02	6e-2	38	Contig9274_s_at	Contig9274	-	-	6e-12	At2g24090	ribosomal protein L35 family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig9274_at	Contig9274	-	-	6e-12	At2g24090	ribosomal protein L35 family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig7860_at	Contig7860	-	-	6e-2	At3g10730	sad1/unc-84-like 2 family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig5344_at	Contig5344	-	-	2e-8	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig14899_at	Contig14899	-	-	5e-1	At1g01830	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig3281_s_at	Contig3281	-	-	2e-45	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig5507_at	Contig5507	-	-	5e-45	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	At5g06240	830511	emb2735 (embryo defective 2735)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	PsAffx.C160000025_s_at	PsAffx.C160000025	-	-	8e+0	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.30	4e-80	299	Oryza sativa	OsAffx.29840.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.219717.1.S1_at	pmrna35721	SAUR family protein	-	5e-5	At5g20820	auxin-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	2e-129	462	Triticum aestivum	TaAffx.105861.1.S1_at	CA730459	-	-	2e+1	At5g66658	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1609012_at	CB341487	hypothetical protein LOC100254309	-	1e-4	At2g01600	epsin N-terminal homology (ENTH) domain-containing protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zea mays	Zm.7596.1.A1_at	BM079087	hypothetical protein LOC100216955	-	6e+0	At5g42504	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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