Gene omics information

Query gene ID	Contig14553_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig14553_at	Contig14553	-	-	2e+0	At2g27790	nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.80	92.5	Contig5659_at	Contig5659	-	-	1e+0	At1g34290	AtRLP5 (Receptor Like Protein 5)	S.X.	H.G.	Please select
0.80	92.5	HV_CEb0012I09r2_x_at	HV_CEb0012I09r2	-	-	5e-1	At1g72890	disease resistance protein (TIR-NBS class), putative	S.X.	H.G.	Please select
0.61	78.7	EBpi01_SQ001_A05_s_at	EBpi01_SQ001_A05	-	-	3e+0	At2g31005	-	S.X.	H.G.	Please select
0.57	74.9	Contig11424_at	Contig11424	-	-	2e+0	At1g21770	-	S.X.	H.G.	Please select
0.22	24.2	Contig13383_at	Contig13383	-	-	1e-8	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.2	99.6	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
10.9	99.2	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
10.2	99.1	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
9.3	99.0	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
9.0	98.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
9.0	98.9	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
8.3	98.8	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
7.0	98.4	GSM160464	drought control rep1	GSE6990	Barley drought stress
6.6	98.2	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
6.2	98.0	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	0	823	rbasd13l17_at	rbasd13l17	-	-	5e+0	At2g30810	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.62	0	823	rbasd13l17_s_at	rbasd13l17	-	-	5e+0	At2g30810	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig5373_s_at	Contig5373	-	-	1e-7	At3g05230	signal peptidase subunit family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig25551_at	Contig25551	-	-	9e-2	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig24271_at	Contig24271	-	-	2e+0	At3g13710	PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)	C.G.	S.X.	Please select
0.02	3e-1	36	bags7h06_at	bags7h06	-	-	4e+0	At3g49750	AtRLP44 (Receptor Like Protein 44)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig10818_at	Contig10818	-	-	1e-2	At1g47970	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig12960_at	Contig12960	-	-	1e-10	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig10834_s_at	Contig10834	-	-	2e-13	At1g76050	pseudouridine synthase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g27790	817326	nucleic acid binding / nucleotide binding	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	GmaAffx.26466.1.S1_at	BE610036	-	-	3e+0	At3g10260	reticulon family protein	C.G.	S.X.	Please select
0.07	1e-6	56	Oryza sativa	Os06g0606000	AK102270.1	-	Serine/threonine protein kinase SOS2(CBL-interacting protein kinase 24)	1e-12	At1g30270	CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e-1	36	Populus trichocarpa	PtpAffx.211949.1.S1_x_at	pmrna23461	hypothetical protein	-	1e-1	At3g26744	ICE1 (INDUCER OF CBF EXPRESSION 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	1e-17	91	Triticum aestivum	Ta.10449.2.S1_at	BJ246118	-	-	5e-6	At4g24400	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8)	C.G.	S.X.	Please select
0.04	2e-1	36	Vitis vinifera	1612887_at	BQ798901	-	-	7e-5	At3g04890	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.16900.1.A1_at	BM339059	-	-	4e+0	At1g64020	serpin-related / serine protease inhibitor-related	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage