Gene omics information

Query gene ID	Contig14526_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.29	35.5	Contig14526_at	Contig14526	-	-	2e-16	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	S.X.	H.G.	Please select
0.80	92.5	Contig6235_s_at	Contig6235	-	-	1e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	S.X.	H.G.	Please select
0.73	88.7	Contig15767_at	Contig15767	-	-	1e-1	At1g21520	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	S.X.	H.G.	Please select
0.61	78.7	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	S.X.	H.G.	Please select
0.31	38.6	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-135	482	Contig8195_at	Contig8195	-	-	4e-90	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	C.G.	S.X.	Please select
0.03	2e-2	40	baak1e23_at	baak1e23	-	-	4e+0	At4g29103	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8443_at	Contig8443	-	-	4e-3	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig7446_at	Contig7446	-	-	3e-1	At4g24240	WRKY7	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8443_s_at	Contig8443	-	-	4e-3	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.02	1e+0	34	EBro08_SQ004_B22_at	EBro08_SQ004_B22	-	-	3e+0	At3g14640	CYP72A10	C.G.	S.X.	Please select
0.02	1e+0	34	Contig24230_at	Contig24230	-	-	3e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11294_at	Contig11294	-	-	2e-7	At5g35970	DNA-binding protein, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7722_at	Contig7722	-	-	4e-5	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-16	87	Arabidopsis thaliana	At2g21790	816715	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	2e-32	141	Glycine max	Gma.9609.1.S1_at	AF118784.1	ribonucleotide reductase large subunit A	-	3e-153	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	C.G.	S.X.	Please select
0.27	5e-126	452	Oryza sativa	Os06g0168600	AK068858.1	-	Ribonucleotide reductase	1e-96	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	1e-48	194	Populus trichocarpa	PtpAffx.11483.1.A1_at	CA821669	hypothetical protein	-	2e-29	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	0	1049	Triticum aestivum	Ta.25584.1.S1_at	CD454169	-	-	4e-21	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	C.G.	S.X.	Please select
0.02	4e-2	38	Vitis vinifera	1617370_at	CF210003	-	-	4e+0	At4g31380	FLP1 (FPF1-LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.41	1e-135	482	Zea mays	Zm.5173.1.A1_at	BM079174	-	-	5e-36	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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