Gene omics information

Query gene ID	Contig14515_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig14515_at	Contig14515	-	-	2e+0	At1g43610	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please select
0.22	24.2	Contig17786_at	Contig17786	-	-	3e-5	At4g27640	importin beta-2 subunit family protein	S.X.	H.G.	Please select
0.21	22.6	Contig25850_at	Contig25850	-	-	4e-4	At5g67490	unknown protein	S.X.	H.G.	Please select
0.17	16.9	Contig13012_at	Contig13012	-	-	2e-3	At1g68400	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please select
0.06	4.8	Contig7674_at	Contig7674	-	-	2e-4	At5g61770	PPAN (PETER PAN-LIKE PROTEIN)	S.X.	H.G.	Please select
0.06	4.8	Contig23330_at	Contig23330	-	-	5e-1	At1g49475	DNA binding / transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.1	99.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
23.6	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.0	99.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.6	99.8	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.8	99.7	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
18.5	99.7	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.5	99.6	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.3	99.6	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.6	99.6	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.3	99.6	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-23	109	Contig14272_at	Contig14272	-	-	1e-1	At5g16250	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig5252_at	Contig5252	-	-	2e-1	At1g78710	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig8519_at	Contig8519	-	-	8e-14	At1g76880	trihelix DNA-binding protein, putative	C.G.	S.X.	Please select
0.02	5e-2	38	Contig3265_s_at	Contig3265	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig10267_at	Contig10267	-	-	2e+0	At5g19250	unknown protein	C.G.	S.X.	Please select
0.03	5e-2	38	Contig5750_s_at	Contig5750	-	-	6e-16	At2g25310	carbohydrate binding	C.G.	S.X.	Please select
0.02	5e-2	38	Contig3265_at	Contig3265	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig7635_s_at	Contig7635	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig13546_at	Contig13546	-	-	3e+0	At3g62528	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g43610	840945	NLI interacting factor (NIF) family protein	F:phosphoprotein phosphatase activity;P:biological_process unknown;C:nucleus;MOFPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	4e-8	59	Glycine max	GmaAffx.82528.2.S1_at	BI702248	-	-	2e-4	At3g02640	unknown protein	C.G.	S.X.	Please select
0.51	2e-143	510	Oryza sativa	Os01g0896400	AK107067.1	-	Conserved hypothetical protein	4e-1	At1g54215	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	Ptp.6632.1.S1_at	CK109432	cytochrome P450	-	2e-36	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	3e-110	398	Triticum aestivum	TaAffx.91506.1.S1_s_at	BJ315107	-	-	6e-2	At5g36710	unknown protein	C.G.	S.X.	Please select
0.07	3e-5	48	Vitis vinifera	1608641_at	CF415486	hypothetical protein LOC100252325 /// hypothetical protein LOC100267455	-	1e-4	At5g36710	unknown protein	C.G.	S.X.	Please select
0.48	5e-150	529	Zea mays	Zm.17534.2.S1_at	CF627668	hypothetical protein LOC100277214	-	3e-2	At5g36710	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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