Gene omics information

Query gene ID	Contig14457_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig14457_s_at	Contig14457	-	-	6e-3	At2g44525	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig733_at	Contig733	-	-	8e-19	At3g04840	40S ribosomal protein S3A (RPS3aA)	S.X.	H.G.	Please select
0.55	72.0	HA10M05u_s_at	HA10M05u	-	-	2e-1	At4g04680	-	S.X.	H.G.	Please select
0.53	69.7	Contig9923_at	Contig9923	-	-	4e+0	At5g49050	-	S.X.	H.G.	Please select
0.33	42.6	HK04P18r_s_at	HK04P18r	CesA6 protein	-	2e+1	Atcg00130	-	S.X.	H.G.	Please select
0.31	38.6	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	97.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1475	Contig14457_at	Contig14457	-	-	6e-3	At2g44525	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig14050_at	Contig14050	-	-	4e-4	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig10638_s_at	Contig10638	-	-	5e-1	At2g20921	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig7441_at	Contig7441	-	-	7e-39	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig20125_at	Contig20125	-	-	3e+0	At3g05540	-	C.G.	S.X.	Please select
0.03	2e-1	36	HO10M16S_at	HO10M16S	-	-	7e-5	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig16099_at	Contig16099	-	-	8e+0	At5g28800	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig6782_at	Contig6782	-	-	6e-1	At5g41660	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	Contig4412_at	Contig4412	-	-	6e-15	At1g79940	ATERDJ2A	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	6e-3	42	Arabidopsis thaliana	At2g44525	819060	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BMOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-6	54	Glycine max	Gma.8578.1.S1_at	BQ079840	-	-	4e-26	At3g60150	unknown protein	C.G.	S.X.	Please select
0.50	4e-129	462	Oryza sativa	Os10g0571100	CA999969	-	Conserved hypothetical protein	3e-11	At3g60150	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	906	Triticum aestivum	Ta.3566.1.S1_at	CA635816	-	-	2e-3	At2g44525	unknown protein	C.G.	S.X.	Please select
0.07	2e-9	61	Vitis vinifera	1621007_s_at	CF512257	hypothetical protein LOC100249656	-	3e-17	At3g60150	unknown protein	C.G.	S.X.	Please select
0.41	8e-93	339	Zea mays	Zm.353.2.S1_at	CO520749	-	-	9e-3	At2g44525	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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