Gene omics information

Query gene ID	Contig14426_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig14426_at	Contig14426	-	-	9e-2	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	S.X.	H.G.	Please select
0.43	56.4	Contig13687_at	Contig13687	-	-	4e+0	At5g12880	proline-rich family protein	S.X.	H.G.	Please select
0.33	42.6	Contig14685_at	Contig14685	-	-	5e+0	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	S.X.	H.G.	Please select
0.33	42.6	Contig13652_at	Contig13652	-	-	8e-7	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	S.X.	H.G.	Please select
0.23	26.1	Contig12495_at	Contig12495	-	-	4e-11	At4g31790	diphthine synthase, putative (DPH5)	S.X.	H.G.	Please select
0.19	19.6	Contig8925_at	Contig8925	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	S.X.	H.G.	Please select
0.13	11.6	Contig17026_at	Contig17026	-	-	1e+0	At1g01770	unknown protein	S.X.	H.G.	Please select
0.12	10.4	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.3	99.8	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
27.3	99.8	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
19.9	99.7	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
19.9	99.7	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
19.1	99.7	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.4	99.5	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.1	99.5	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.5	99.5	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.5	99.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.1	99.1	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	7e-81	299	HVSMEn0025O19r2_at	HVSMEn0025O19r2	-	-	4e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	C.G.	S.X.	Please select
0.28	1e-48	192	Contig6799_at	Contig6799	cinnamoyl CoA reductase	-	8e-13	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please select
0.16	2e-19	95	Contig8527_at	Contig8527	-	-	7e-1	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	C.G.	S.X.	Please select
0.03	1e-2	40	Contig4419_at	Contig4419	-	-	9e-2	At1g22630	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	HVSMEa0019P15r2_at	HVSMEa0019P15r2	-	-	7e-8	At5g14780	FDH (FORMATE DEHYDROGENASE)	C.G.	S.X.	Please select
0.04	1e-2	40	HVSMEg0001I20f_x_at	HVSMEg0001I20f	-	-	2e-1	At1g80780	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please select
0.04	1e-2	40	HVSMEg0001I20f_at	HVSMEg0001I20f	-	-	2e-1	At1g80780	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please select
0.01	2e-1	36	Contig12105_at	Contig12105	-	-	2e-2	At3g52640	nicastrin-related	C.G.	S.X.	Please select
0.01	2e-1	36	Contig278_at	Contig278	-	-	9e-41	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-2	38	Arabidopsis thaliana	At1g80820	844421	CCR2 (CINNAMOYL COA REDUCTASE)	Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psZS006xF23f_s_at	PsAffx.psZS006xF23f	-	-	1e+0	At1g49400	emb1129 (embryo defective 1129)	C.G.	S.X.	Please select
0.25	2e-28	127	Oryza sativa	Os08g0441500	AK102061.1	-	Cinnamoyl-CoA reductase	2e+0	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-2	40	Populus trichocarpa	PtpAffx.5326.7.S1_at	CK095802	cinnamoyl CoA reductase /// cinnamoyl CoA reductase /// cinnamoyl CoA reductase /// cinnamoyl CoA reductase /// cinnamoyl CoA reductase /// hypothetical protein /// hypothetical protein /// hypothetical protein /// hypothetical protein	-	3e-8	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	5e-108	391	Triticum aestivum	TaAffx.6303.1.S1_x_at	CA688541	-	-	6e-5	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1619294_at	CB342123	-	-	1e-1	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.24	6e-35	147	Zea mays	Zm.2550.1.S1_at	CF632382	cinnamoyl CoA reductase1	-	2e-1	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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