Gene omics information

Query gene ID	Contig14377_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig14377_at	Contig14377	-	-	6e+0	At4g02040	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig13638_at	Contig13638	-	-	4e+0	At4g25660	unknown protein	S.X.	H.G.	Please select
0.59	75.8	Contig20160_at	Contig20160	-	-	8e-2	At3g59740	receptor lectin kinase 3 (lecRK3)	S.X.	H.G.	Please select
0.43	56.4	Contig10899_at	Contig10899	-	-	3e+0	At3g63530	BB (BIG BROTHER)	S.X.	H.G.	Please select
0.38	49.5	Contig1493_at	Contig1493	-	-	8e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	S.X.	H.G.	Please select
0.24	27.2	Contig24660_at	Contig24660	-	-	6e+0	Atmg00680	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.7	99.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
25.5	99.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
18.2	99.7	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.6	99.6	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.0	99.6	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.8	99.6	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.9	99.5	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.5	99.5	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
13.2	99.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.6	99.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	6e-26	117	Contig8049_at	Contig8049	-	-	2e-1	At3g02040	SRG3 (senescence-related gene 3)	C.G.	S.X.	Please select
0.02	7e-1	34	Contig15018_at	Contig15018	-	-	2e+0	At4g10920	KELP	C.G.	S.X.	Please select
0.02	7e-1	34	Contig14081_at	Contig14081	-	-	1e-1	At1g22340	AtUGT85A7 (UDP-glucosyl transferase 85A7)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig7057_at	Contig7057	-	-	2e-1	At4g36620	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.01	7e-1	34	Contig4589_at	Contig4589	-	-	6e-30	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig4285_at	Contig4285	-	-	4e-1	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig18332_at	Contig18332	-	-	4e-8	At3g63310	glutamate binding	C.G.	S.X.	Please select
0.02	3e+0	32	Contig11428_at	Contig11428	-	-	3e-2	At2g40080	ELF4 (EARLY FLOWERING 4)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig9814_at	Contig9814	-	-	8e-1	At4g19270	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At4g02040	828161	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.psHB043xF04f_at	PsAffx.psHB043xF04f	-	-	4e+0	At5g10990	auxin-responsive family protein	C.G.	S.X.	Please select
0.22	1e-57	224	Oryza sativa	Os04g0394100	9632.m03080	-	Glycerophosphoryl diester phosphodiesterase familyprotein	4e-2	At3g02040	SRG3 (senescence-related gene 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.207498.1.S1_at	pmrna14887	hypothetical protein	-	2e-10	At3g21200	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	0	682	Triticum aestivum	Ta.6770.1.S1_s_at	BQ168403	-	-	4e-1	At3g02040	SRG3 (senescence-related gene 3)	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1619412_at	CB342923	-	-	2e+0	At1g32280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.23	3e-52	204	Zea mays	Zm.13162.1.A1_at	CO521967	-	-	9e-3	At3g02040	SRG3 (senescence-related gene 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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