CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig14353_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 80.3 Contig14353_at Contig14353 - - 9e-3 At1g49950 DNA-binding protein, putative S.X. H.G.
0.92 98.4 Contig24888_at Contig24888 - - 1e+0 At2g26940 zinc finger (C2H2 type) family protein S.X. H.G.
0.92 98.4 Contig6587_s_at Contig6587 - - 1e-4 At3g52470 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.92 98.4 rbags16i08_s_at rbags16i08 - - 8e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) S.X. H.G.
0.83 94.0 Contig2750_s_at Contig2750 - - 4e-15 At2g33150 PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3) S.X. H.G.
0.73 88.7 Contig2749_at Contig2749 - - 1e+0 At1g03055 unknown protein S.X. H.G.
0.71 87.1 Contig2748_at Contig2748 - - 1e-2 At4g20130 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.2 99.8 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
16.5 99.6 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.0 99.3 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.6 98.8 GSM261065 Xantha s-46 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9 98.7 GSM261059 Xantha b-12 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4 98.5 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.2 98.0 GSM398251 Martin_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.7 97.7 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM261060 Xantha b-12 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9 97.1 GSM398262 HS41-1_0d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-15 83 Contig6823_at Contig6823 - - 2e-1 At1g72740 DNA-binding family protein / histone H1/H5 family protein C.G. S.X.
0.07 7e-5 48 Contig6822_s_at Contig6822 - - 4e-1 At3g50845 - C.G. S.X.
0.02 1e-3 44 Contig10358_at Contig10358 - - 8e-1 At5g67580 TRB2 C.G. S.X.
0.01 2e-2 40 Contig5147_at Contig5147 - - 1e-1 At4g33210 F-box family protein (FBL15) C.G. S.X.
0.03 7e-2 38 Contig16255_s_at Contig16255 - - 2e-11 At3g46590 TRFL1 (TRF-LIKE 1) C.G. S.X.
0.01 1e+0 34 Contig8862_at Contig8862 - - 4e+0 At3g21730 dihydroneopterin aldolase family protein C.G. S.X.
0.01 1e+0 34 Contig15350_at Contig15350 - - 5e-1 At1g52790 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 1e+0 34 Contig19285_at Contig19285 - - 9e-1 At1g52320 unknown protein C.G. S.X.
0.02 4e+0 32 HW06I17u_at HW06I17u - - 4e-9 At2g46860 AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 9e-3 42 Arabidopsis thaliana At1g49950 841418 DNA-binding protein, putative Encodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats. - - - C.G. S.X.
0.03 2e-1 38 Glycine max Gma.18077.1.S1_at BG508957 - - 3e-4 At1g49950 DNA-binding protein, putative C.G. S.X.
0.18 6e-21 103 Oryza sativa Os12g0613300 AK100618.1 - Myb, DNA-binding domain containing protein 1e-2 At1g49950 DNA-binding protein, putative C.G. S.X.
0.02 8e-1 36 Populus trichocarpa PtpAffx.110074.1.A1_at BU816299 - - 3e+0 At1g62480 vacuolar calcium-binding protein-related C.G. S.X.
0.10 1e-11 71 Triticum aestivum Ta.13283.1.A1_s_at BQ171085 - - 1e-1 At3g03660 WOX11 (WUSCHEL related homeobox 11) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1618781_at CB922984 hypothetical protein LOC100260972 - 1e+0 At1g65032 unknown protein C.G. S.X.
0.38 1e-49 196 Zea mays Zm.3940.1.S1_at AY280630.1 single myb histone 5 - 3e-3 At1g49950 DNA-binding protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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