Gene omics information

Query gene ID	Contig1434_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	S.X.	H.G.	Please select
0.67	84.7	Contig8495_at	Contig8495	-	-	2e-5	At2g24740	SDG21 (SET DOMAIN GROUP 21)	S.X.	H.G.	Please select
0.61	78.7	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.59	75.8	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	S.X.	H.G.	Please select
0.53	69.7	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	S.X.	H.G.	Please select
0.50	66.9	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.9	95.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.0	93.8	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.8	93.1	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
2.7	92.7	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	5e-7	54	Contig664_x_at	Contig664	-	-	1e+1	At5g47170	unknown protein	C.G.	S.X.	Please select
0.04	4e-4	44	Contig4486_at	Contig4486	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.04	4e-4	44	Contig11133_at	Contig11133	-	-	4e-1	At4g29480	mitochondrial ATP synthase g subunit family protein	C.G.	S.X.	Please select
0.04	4e-4	44	Contig4487_s_at	Contig4487	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.04	4e-4	44	Contig4191_at	Contig4191	-	-	2e-6	At5g08180	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	C.G.	S.X.	Please select
0.03	2e-3	42	Contig7573_at	Contig7573	-	-	9e-12	At1g21065	unknown protein	C.G.	S.X.	Please select
0.03	2e-3	42	Contig7078_at	Contig7078	-	-	2e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	C.G.	S.X.	Please select
0.02	2e-3	42	Contig6935_at	Contig6935	-	-	2e-5	At5g27540	MIRO1 (Miro-related GTP-ase 1)	C.G.	S.X.	Please select
0.03	2e-3	42	Contig7078_s_at	Contig7078	-	-	2e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At5g58580	835972	ATL63 (ARABIDOPSIS TÓ	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-3	42	Glycine max	PsAffx.psZO001iF05r_s_at	PsAffx.psZO001iF05r	-	-	4e+0	At4g34290	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select
0.08	5e-10	65	Oryza sativa	Os02g0121100	AK070711.1	-	Cold-shock protein, DNA-binding domain containingprotein	5e-11	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-3	44	Populus trichocarpa	PtpAffx.224082.1.S1_x_at	pmrna42319	hypothetical protein	-	1e-2	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	4e-52	204	Triticum aestivum	Ta.1068.2.S1_x_at	CA670770	-	-	2e+1	At2g18370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	7e-2	36	Vitis vinifera	1611981_at	CF403805	-	-	6e-2	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	C.G.	S.X.	Please select
0.12	3e-14	77	Zea mays	Zm.6231.1.A1_x_at	AY104594.1	60S ribosomal protein L10-3	-	6e+0	At3g46040	RPS15AD (ribosomal protein S15A D)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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