Gene omics information

Query gene ID	Contig14349_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.32	40.3	Contig14349_at	Contig14349	-	-	1e+1	Atmg00010	-	S.X.	H.G.	Please select
0.75	89.5	Contig18846_at	Contig18846	-	-	4e+0	At3g27831	-	S.X.	H.G.	Please select
0.73	88.7	HS06J22u_s_at	HS06J22u	-	-	7e-5	At5g27520	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	S.X.	H.G.	Please select
0.60	77.3	Contig4494_x_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	S.X.	H.G.	Please select
0.57	74.9	HVSMEh0085G19f_at	HVSMEh0085G19f	-	-	3e+0	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	S.X.	H.G.	Please select
0.46	61.0	Contig24268_at	Contig24268	-	-	2e+0	At5g57345	unknown protein	S.X.	H.G.	Please select
0.43	56.4	HY02G07u_at	HY02G07u	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.9	99.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
19.1	99.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
7.0	98.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	4e-121	434	HVSMEg0015E17r2_at	HVSMEg0015E17r2	-	-	8e-1	At2g25120	bromo-adjacent homology (BAH) domain-containing protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig2803_at	Contig2803	-	-	8e-35	At2g30970	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig2799_at	Contig2799	-	-	9e-41	At2g30970	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig23805_at	Contig23805	-	-	2e+0	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig16401_at	Contig16401	-	-	7e-1	At1g23860	RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11745_at	Contig11745	-	-	9e-1	At1g27210	binding	C.G.	S.X.	Please select
0.02	1e+0	34	Contig5551_at	Contig5551	-	-	1e-17	At2g32260	cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative	C.G.	S.X.	Please select
0.02	5e+0	32	Contig9332_at	Contig9332	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	C.G.	S.X.	Please select
0.02	5e+0	32	Contig4691_at	Contig4691	-	-	2e-14	At2g45070	SEC61 BETA	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	32	Arabidopsis thaliana	Atmg00010	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	PsAffx.C68000081_s_at	PsAffx.C68000081	-	-	9e-1	At4g04745	unknown protein	C.G.	S.X.	Please select
0.44	5e-111	402	Oryza sativa	Os04g0465700	CA762311	-	RNA dependent RNA polymerase family protein	1e+0	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.221836.1.S1_at	pmrna38915	-	-	3e-1	At4g31430	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	5e-91	335	Triticum aestivum	Ta.9587.1.S1_at	BJ250285	-	-	7e+0	At5g42410	auxin-responsive family protein	C.G.	S.X.	Please select
0.12	2e-1	36	Vitis vinifera	1612733_at	CF404433	-	-	3e-10	At4g11130	RDR2 (RNA-DEPENDENT RNA POLYMERASE 2)	C.G.	S.X.	Please select
0.16	1e-9	63	Zea mays	Zm.2857.1.A1_at	AW231567	-	-	5e+0	At2g17705	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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