Gene omics information

Query gene ID	Contig14329_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig14329_at	Contig14329	-	-	4e-4	At1g04870	PRMT10	S.X.	H.G.	Please select
0.67	84.7	HVSMEi0002I06r2_x_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig13538_at	Contig13538	-	-	2e+0	At4g36430	peroxidase, putative	S.X.	H.G.	Please select
0.50	66.9	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	S.X.	H.G.	Please select
0.50	66.9	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	S.X.	H.G.	Please select
0.43	56.4	Contig18044_at	Contig18044	-	-	1e+0	At3g47070	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.8	99.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
12.5	99.4	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
10.5	99.2	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.8	99.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.5	98.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
8.0	98.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-1	34	Contig7903_at	Contig7903	-	-	2e-11	At3g12280	RBR1 (RETINOBLASTOMA-RELATED 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig12037_at	Contig12037	-	-	2e-4	At5g22300	NIT4 (NITRILASE 4)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig11273_at	Contig11273	-	-	2e-13	At1g63170	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig2518_s_at	Contig2518	-	-	6e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig10423_at	Contig10423	-	-	1e-20	At2g35170	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	C.G.	S.X.	Please select
0.02	3e+0	32	Contig20760_at	Contig20760	-	-	4e-1	At5g57887	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	32	HV12C23u_x_at	HV12C23u	-	-	5e+0	At5g35475	-	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5140_at	Contig5140	-	-	3e-5	At2g16920	UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)	C.G.	S.X.	Please select
0.01	1e+1	30	AY009939_CDS-2_s_at	AY009939_CDS-2	-	-	4e-1	At3g43630	nodulin, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-4	46	Arabidopsis thaliana	At1g04870	839393	PRMT10	Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-1	36	Glycine max	HgAffx.8073.1.S1_at	CB824138	-	-	1e+0	At3g42155	catalytic/ hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.35	1e-76	287	Oryza sativa	Os06g0142800	AK103971.1	-	SAM (and some other nucleotide) binding motifdomain containing protein	2e-23	At1g04870	PRMT10	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.36701.1.S1_s_at	CF936040	hypothetical protein	-	1e-34	At2g21270	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.34652.3.S1_at	CA695951	-	-	4e+0	At1g72175	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1617583_at	BQ797513	hypothetical protein LOC100247613	-	6e+0	At3g18740	60S ribosomal protein L30 (RPL30C)	C.G.	S.X.	Please select
0.31	2e-44	178	Zea mays	Zm.17595.1.A1_a_at	CF019038	-	-	4e-18	At1g04870	PRMT10	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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