Gene omics information

Query gene ID	Contig14251_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig14251_at	Contig14251	-	-	4e+0	At2g46170	reticulon family protein (RTNLB5)	S.X.	H.G.	Please select
0.44	58.9	Contig10458_s_at	Contig10458	-	-	6e+0	At3g44350	anac061 (Arabidopsis NAC domain containing protein 61)	S.X.	H.G.	Please select
0.33	42.6	Contig21004_at	Contig21004	-	-	2e+1	At5g19030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.20	21.1	Contig7044_at	Contig7044	-	-	4e-3	At5g42090	-	S.X.	H.G.	Please select
0.19	19.6	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	S.X.	H.G.	Please select
0.18	18.2	Contig1498_s_at	Contig1498	-	-	7e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.1	99.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
20.0	99.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
19.8	99.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.8	99.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.7	99.2	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.8	99.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Contig14536_at	Contig14536	-	-	2e+0	At3g04500	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig10309_s_at	Contig10309	-	-	6e+0	At5g22520	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig10309_at	Contig10309	-	-	6e+0	At5g22520	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig18578_at	Contig18578	-	-	2e+0	At1g51720	glutamate dehydrogenase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Contig14215_at	Contig14215	-	-	4e+0	At3g18740	60S ribosomal protein L30 (RPL30C)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig26218_at	Contig26218	-	-	2e+0	At5g42180	peroxidase 64 (PER64) (P64) (PRXR4)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10745_at	Contig10745	-	-	5e-1	At5g43380	TOPP6	C.G.	S.X.	Please select
0.01	2e+0	32	Contig10065_at	Contig10065	-	-	3e+0	Atmg01260	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig9088_at	Contig9088	-	-	1e+0	At5g46190	KH domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At2g46170	819224	reticulon family protein (RTNLB5)	F:unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	GmaAffx.83702.1.S1_at	BU965345	-	-	2e-18	At5g42150	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please select
0.10	3e-21	103	Oryza sativa	OsAffx.4947.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.204747.1.S1_at	pmrna9343	hypothetical protein	-	9e-8	At3g19670	protein binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	5e-6	52	Triticum aestivum	TaAffx.47591.1.A1_at	CD903548	-	-	2e+0	At3g27880	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1609634_at	CF415762	-	-	2e-1	At4g27490	3' exoribonuclease family domain 1-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.3019.1.A1_at	CK368018	pollen-specific arabinogalacta protein BAN102	-	1e+0	At2g41905	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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