Gene omics information

Query gene ID	Contig14162_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.3	Contig14162_at	Contig14162	-	-	2e-14	At4g36400	FAD linked oxidase family protein	S.X.	H.G.	Please select
0.71	87.1	Contig7876_at	Contig7876	-	-	3e-2	At1g13380	unknown protein	S.X.	H.G.	Please select
0.47	62.2	Contig1126_s_at	Contig1126	-	-	7e+0	At5g40980	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig8824_at	Contig8824	-	-	1e-3	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	S.X.	H.G.	Please select
0.36	47.1	Contig6954_at	Contig6954	-	-	5e-1	At3g17330	ECT6 (evolutionarily conserved C-terminal region 6)	S.X.	H.G.	Please select
0.31	38.6	Contig18979_at	Contig18979	-	-	1e+0	At3g45230	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.9	99.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
15.1	99.5	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
14.6	99.5	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
13.4	99.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
10.9	99.2	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
10.7	99.2	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.8	98.9	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
8.0	98.7	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.3	98.5	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.2	98.5	GSM160831	7% SWC rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	3798	Contig14162_s_at	Contig14162	-	-	2e-14	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please select
0.39	0	815	Contig18356_at	Contig18356	-	-	4e-4	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig12838_at	Contig12838	-	-	4e-3	At5g18070	DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig8892_at	Contig8892	flowering time control protein	-	4e-13	At4g16280	FCA	C.G.	S.X.	Please select
0.01	2e+0	34	Contig10777_at	Contig10777	-	-	2e-12	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig4374_s_at	Contig4374	-	-	6e-1	At2g33600	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.01	2e+0	34	Contig20428_at	Contig20428	-	-	5e-4	At5g02070	protein kinase-related	C.G.	S.X.	Please select
0.01	2e+0	34	Contig23768_at	Contig23768	-	-	1e+0	At1g17780	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig917_s_at	Contig917	-	-	4e-95	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-14	81	Arabidopsis thaliana	At4g36400	829792	FAD linked oxidase family protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:biological_process unknown;C:mitochondrion;BOFMAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-3	46	Glycine max	Gma.1927.3.S1_at	BF598349	-	-	1e-11	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please select
0.45	0	787	Oryza sativa	Os07g0187200	AK065328.1	-	Hypothetical protein	5e-4	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	4e-4	48	Populus trichocarpa	PtpAffx.115467.1.S1_at	AJ777473	hypothetical protein	-	8e-24	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	3e-96	353	Triticum aestivum	Ta.26921.3.S1_x_at	CA609873	-	-	3e-5	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1618530_at	CF513440	-	-	4e+0	At5g15570	-	C.G.	S.X.	Please select
0.01	6e+0	32	Zea mays	ZmAffx.725.1.A1_at	AI739939	oxidoreductase	-	7e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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