Gene omics information

Query gene ID	Contig14154_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.58	74.9	Contig14154_at	Contig14154	-	-	2e+0	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	S.X.	H.G.	Please select
0.78	91.2	Contig24555_at	Contig24555	-	-	1e+0	At2g45070	SEC61 BETA	S.X.	H.G.	Please select
0.65	81.4	Contig17958_at	Contig17958	-	-	2e+0	At5g40370	glutaredoxin, putative	S.X.	H.G.	Please select
0.64	80.9	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.59	75.8	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	S.X.	H.G.	Please select
0.52	68.3	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.50	66.9	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	S.X.	H.G.	Please select
0.44	58.9	Contig8882_at	Contig8882	-	-	4e-2	At3g59680	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig5234_at	Contig5234	-	-	5e-11	At1g09140	SF2/ASF-like splicing modulator (SRP30)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.1	99.1	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.4	98.8	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.9	98.3	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-2	38	Contig12564_at	Contig12564	-	-	4e-1	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig1830_at	Contig1830	-	-	6e-3	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig11219_at	Contig11219	-	-	3e-38	At1g22840	CYTC-1 (CYTOCHROME C-1)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig1832_x_at	Contig1832	-	-	6e-3	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig1837_at	Contig1837	-	-	1e-2	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig1832_s_at	Contig1832	-	-	6e-3	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig1832_at	Contig1832	-	-	6e-3	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig1830_s_at	Contig1830	-	-	6e-3	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.01	9e-1	34	Contig446_at	Contig446	-	-	1e-33	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At1g60320	842327	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	4e-2	40	Glycine max	GmaAffx.62129.1.S1_at	BE023298	-	-	5e-4	At3g49790	ATP binding	C.G.	S.X.	Please select
0.38	3e-44	180	Oryza sativa	Os07g0124000	9635.m00230	-	Conserved hypothetical protein	2e-3	At2g30560	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-2	42	Populus trichocarpa	PtpAffx.207436.1.S1_at	pmrna14767	hypothetical protein	-	2e-4	At1g10150	carbohydrate binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.40924.2.S1_x_at	BJ265043	-	-	7e-1	At5g52260	AtMYB19 (myb domain protein 19)	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1615076_at	CF201096.1	-	-	4e-7	At1g22280	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.09	6e-14	77	Zea mays	Zm.764.1.S1_at	CO534311	hypothetical protein LOC100191336	-	2e-1	At1g10150	carbohydrate binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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