Gene omics information

Query gene ID	Contig14012_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	S.X.	H.G.	Please select
0.77	90.8	HA26O09r_s_at	HA26O09r	-	-	6e+0	At3g52780	PAP20	S.X.	H.G.	Please select
0.50	66.9	Contig2832_s_at	Contig2832	-	-	6e+0	At4g36530	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.50	66.9	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	S.X.	H.G.	Please select
0.44	58.9	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.27	32.1	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.7	99.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
29.5	99.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
25.3	99.8	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
21.6	99.8	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.2	99.7	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
16.0	99.6	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
14.2	99.5	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.8	99.4	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.4	99.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
10.9	99.2	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	858	Contig14013_s_at	Contig14013	-	-	4e+0	At5g55690	MADS-box protein (AGL47)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig1314_s_at	Contig1314	-	-	7e-2	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig13695_at	Contig13695	-	-	2e-20	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9877_at	Contig9877	-	-	5e-2	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Contig12741_at	Contig12741	-	-	1e+0	At2g02030	F-box family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14104_at	Contig14104	-	-	5e-1	At2g06570	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11661_at	Contig11661	-	-	2e-28	At4g21110	G10 family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8378_at	Contig8378	-	-	2e+0	At2g28370	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig6579_at	Contig6579	-	-	8e-9	At4g21110	G10 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-1	36	Arabidopsis thaliana	At4g23920	828492	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in growth and cell wall carbohydrate biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	Gma.3668.3.S1_a_at	AW704362	-	-	2e-8	At1g77330	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	C.G.	S.X.	Please select
0.04	3e-1	38	Oryza sativa	Os11g0225000	AK062328.1	-	Serine/threonine protein kinase domain containingprotein	1e+0	At5g13900	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	34	Populus trichocarpa	PtpAffx.82251.1.A1_at	CV254511	hypothetical protein	-	1e-3	At4g33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	1e-24	115	Triticum aestivum	TaAffx.27751.1.S1_at	CA671211	-	-	6e-1	At1g52200	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1621137_at	CB975552	hypothetical protein LOC100259669	-	1e-1	At1g48320	thioesterase family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.67.1.S1_at	AY104025.1	Actin-depolymerizing factor	-	3e-5	At4g25590	ADF7 (actin depolymerizing factor 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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