Gene omics information

Query gene ID	Contig13998_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	62.2	Contig13998_at	Contig13998	-	-	2e+0	At1g36240	60S ribosomal protein L30 (RPL30A)	S.X.	H.G.	Please select
0.27	32.1	Contig9896_at	Contig9896	-	-	3e+0	At5g19030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.22	24.2	Contig21012_at	Contig21012	-	-	5e+0	At5g33898	unknown protein	S.X.	H.G.	Please select
0.14	12.9	Contig20761_at	Contig20761	-	-	7e-2	At1g09176	unknown protein	S.X.	H.G.	Please select
0.11	9.4	HVSMEn0023M22r2_at	HVSMEn0023M22r2	-	-	1e+0	At1g46408	AGL97 (AGAMOUS-LIKE 97)	S.X.	H.G.	Please select
0.07	5.8	Contig24558_at	Contig24558	-	-	2e-44	At2g36170	ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
149.0	100.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
130.9	100.0	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
122.9	100.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
0.0	29.9	GSM68901	27 h control replicate 1	GSE3097	Barley1 salinity stress study
0.0	29.9	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
0.0	29.9	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
0.0	29.9	GSM68889	3 h control replicate 1	GSE3097	Barley1 salinity stress study
0.0	29.9	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
0.0	29.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
0.0	29.9	GSM68898	8 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	3e-12	71	Contig22353_x_at	Contig22353	-	-	1e-1	At4g14110	COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)	C.G.	S.X.	Please select
0.26	3e-12	71	Contig22353_at	Contig22353	-	-	1e-1	At4g14110	COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)	C.G.	S.X.	Please select
0.14	2e-10	65	Contig12534_at	Contig12534	-	-	4e-1	At1g69828	-	C.G.	S.X.	Please select
0.06	1e-5	50	Contig407_x_at	Contig407	-	-	9e-2	At4g14110	COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)	C.G.	S.X.	Please select
0.03	5e-2	38	Contig18564_at	Contig18564	-	-	2e-5	At2g41905	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig14830_at	Contig14830	-	-	9e+0	At5g13780	GCN5-related N-acetyltransferase, putative	C.G.	S.X.	Please select
0.03	2e-1	36	Contig9172_at	Contig9172	-	-	4e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig9172_s_at	Contig9172	-	-	4e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig11648_at	Contig11648	-	-	5e-13	At5g04360	ATLDA (LIMIT DEXTRINASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g36240	840530	60S ribosomal protein L30 (RPL30A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.C285000004_at	PsAffx.C285000004	-	-	5e+0	At5g64400	-	C.G.	S.X.	Please select
0.17	3e-22	107	Oryza sativa	Os02g0520500	AK107896.1	-	Conserved hypothetical protein	6e+0	At3g31401	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.217935.1.S1_at	pmrna33404	hypothetical protein	-	9e-1	At5g14100	ATNAP14	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.66	9e-141	500	Triticum aestivum	Ta.4231.1.S1_at	CA741482	-	-	6e+0	At3g09280	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1621327_at	CB971488	hypothetical protein LOC100250889	-	1e+0	At1g62990	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.795.1.A1_at	AI770340	-	-	3e-3	At5g46350	WRKY8	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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