Gene omics information

Query gene ID	Contig13988_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.80	92.5	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.73	88.7	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig14599_at	Contig14599	-	-	3e-2	At3g17160	unknown protein	S.X.	H.G.	Please select
0.57	74.9	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	S.X.	H.G.	Please select
0.50	66.9	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.6	99.5	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.5	99.0	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.9	98.9	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.8	98.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.8	98.6	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.7	98.6	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.5	98.6	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5	98.2	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	HZ36N03r_at	HZ36N03r	-	-	5e+0	At5g58900	myb family transcription factor	C.G.	S.X.	Please select
0.02	2e-1	36	Contig7726_at	Contig7726	-	-	6e-1	At1g74530	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig5206_s_at	Contig5206	-	-	5e-6	At5g07390	ATRBOHA (respiratory burst oxidase homolog A)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig10874_at	Contig10874	-	-	1e-1	At1g76750	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	HA03A11u_at	HA03A11u	-	-	6e-18	At1g07790	HTB1	C.G.	S.X.	Please select
0.02	8e-1	34	Contig1166_s_at	Contig1166	-	-	7e-18	At1g07790	HTB1	C.G.	S.X.	Please select
0.02	3e+0	32	HV03P03u_at	HV03P03u	-	-	2e-2	At2g47810	NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig8954_at	Contig8954	-	-	5e-1	At3g45150	TCP16 (TCP domain protein 16)	C.G.	S.X.	Please select
0.03	3e+0	32	Contig19243_at	Contig19243	-	-	7e-1	At1g29850	double-stranded DNA-binding family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-4	46	Arabidopsis thaliana	At4g24020	828502	NLP7 (NIN LIKE PROTEIN 7)	Encodes NIN Like Protein 7 (NLP7). Modulates nitrate sensing and metabolism. Mutants of NLP7 show features of nitrogen-starved plants and are tolerant to drought stress. Localized in the nucleus and functions as a putative transcription factor.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-1	36	Glycine max	GmaAffx.49350.1.A1_at	BE820999	-	-	2e-7	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	C.G.	S.X.	Please select
0.19	3e-102	373	Oryza sativa	Os01g0236700	AK067319.1	-	-	3e-17	At1g64530	RWP-RK domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.2284.1.S1_at	CV272279	hypothetical protein	-	9e-2	At5g21960	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	9e-166	583	Triticum aestivum	Ta.12992.1.S1_at	BQ281717	-	-	4e-1	At5g24310	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.02	1e-1	36	Vitis vinifera	1617883_at	CF413837	hypothetical protein LOC100249658	-	1e+0	At2g47840	tic20 protein-related	C.G.	S.X.	Please select
0.48	1e-79	295	Zea mays	Zm.2848.1.S1_at	BE639815	-	-	5e-1	At1g19060	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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