Gene omics information

Query gene ID	Contig13984_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig13984_at	Contig13984	-	-	6e-7	At5g07030	aspartic-type endopeptidase	S.X.	H.G.	Please select
0.60	77.3	Contig4051_at	Contig4051	-	-	2e+0	At5g58575	-	S.X.	H.G.	Please select
0.55	72.0	Contig676_at	Contig676	-	-	2e-20	At5g10980	histone H3	S.X.	H.G.	Please select
0.50	66.9	Contig3521_at	Contig3521	-	-	1e-3	At4g30010	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig4056_at	Contig4056	-	-	7e-2	At1g64185	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please select
0.29	35.5	HU11F22u_s_at	HU11F22u	-	-	4e+0	At5g12320	ankyrin repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.6	99.8	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.4	99.7	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.3	99.7	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.3	99.7	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
18.6	99.7	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
17.6	99.6	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.8	99.6	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.2	99.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.9	99.5	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.5	99.5	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	4e-9	61	Contig10558_at	Contig10558	-	-	8e-4	At5g07030	aspartic-type endopeptidase	C.G.	S.X.	Please select
0.05	4e-3	42	Contig9418_at	Contig9418	-	-	2e+0	At3g18490	aspartyl protease family protein	C.G.	S.X.	Please select
0.01	2e-2	40	Contig6013_at	Contig6013	-	-	4e+0	At4g29020	glycine-rich protein	C.G.	S.X.	Please select
0.03	2e-2	40	Contig14342_at	Contig14342	-	-	5e+0	At1g07485	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig14373_at	Contig14373	-	-	1e-7	At1g22880	CEL5 (CELLULASE 5)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig9000_at	Contig9000	-	-	9e+0	At2g21320	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig11699_at	Contig11699	-	-	2e-3	At5g05600	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig7204_at	Contig7204	-	-	2e+0	At3g48630	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig3814_at	Contig3814	-	-	2e-18	At3g55610	P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-7	56	Arabidopsis thaliana	At5g07030	830594	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, plant-type cell wall;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	8e-4	46	Glycine max	Gma.4459.1.S1_at	CD402416	-	-	2e-4	At1g09750	chloroplast nucleoid DNA-binding protein-related	C.G.	S.X.	Please select
0.51	0	769	Oryza sativa	Os07g0658600	CK738634	-	Radc1	1e-8	At5g07030	aspartic-type endopeptidase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-2	42	Populus trichocarpa	PtpAffx.4070.2.S1_at	CV275345	hypothetical protein	-	7e+0	Atcg00470	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.85	0	1197	Triticum aestivum	TaAffx.18815.1.S1_at	BJ314758	-	-	3e-5	At5g07030	aspartic-type endopeptidase	C.G.	S.X.	Please select
0.19	5e-20	97	Vitis vinifera	1606471_at	CF372161	hypothetical protein LOC100244589	-	3e-6	At5g07030	aspartic-type endopeptidase	C.G.	S.X.	Please select
0.42	7e-91	333	Zea mays	Zm.1133.1.S1_at	BM382336	hypothetical protein LOC100191400	-	6e-8	At5g07030	aspartic-type endopeptidase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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