Gene omics information

Query gene ID	Contig13944_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig13944_at	Contig13944	-	-	3e-1	At2g47210	myb family transcription factor	S.X.	H.G.	Please select
0.50	66.9	Contig7267_at	Contig7267	-	-	1e-3	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	S.X.	H.G.	Please select
0.50	66.9	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.50	66.9	Contig13204_at	Contig13204	-	-	6e-1	At2g03570	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select
0.27	32.1	Contig17421_at	Contig17421	-	-	4e+0	At1g45248	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.3	98.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
4.8	97.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2	96.3	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.85	0	827	Contig13943_s_at	Contig13943	-	-	4e+0	At4g00880	auxin-responsive family protein	C.G.	S.X.	Please select
0.63	7e-115	412	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	C.G.	S.X.	Please select
0.01	2e-1	36	Contig5546_at	Contig5546	-	-	3e-4	At3g11100	transcription factor	C.G.	S.X.	Please select
0.02	6e-1	34	Contig8989_at	Contig8989	-	-	1e-1	At5g49230	HRB1 (HYPERSENSITIVE TO RED AND BLUE)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig16985_at	Contig16985	-	-	8e-3	At5g23370	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Contig14758_at	Contig14758	-	-	2e-13	At1g68410	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please select
0.02	2e+0	32	Contig13542_at	Contig13542	-	-	1e-1	At3g46070	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8752_at	Contig8752	-	-	1e-7	At5g67420	LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig7814_at	Contig7814	-	-	1e-3	At4g11560	bromo-adjacent homology (BAH) domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Arabidopsis thaliana	At2g47210	819334	myb family transcription factor	F:transcription factor activity, DNA binding;P:N-terminal protein myristoylation, regulation of transcription, DNA-dependent;C:unknown;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-3	44	Glycine max	GmaAffx.43499.1.S1_at	CD407408	-	-	5e-3	At1g12470	Pep3/Vps18/deep orange family protein	C.G.	S.X.	Please select
0.16	7e-50	198	Oryza sativa	Os08g0178100	AK101717.1	-	Pep3/Vps18/deep orange domain containing protein	1e-10	At1g12470	Pep3/Vps18/deep orange family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-5	50	Populus trichocarpa	Ptp.4836.1.S1_at	CV264041	hypothetical protein	-	1e-19	At1g12470	Pep3/Vps18/deep orange family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.25049.1.S1_at	CA707674	-	-	3e+0	At3g29170	unknown protein	C.G.	S.X.	Please select
0.06	3e-5	48	Vitis vinifera	1617805_at	CD013683	hypothetical protein LOC100254609	-	1e-13	At1g12470	Pep3/Vps18/deep orange family protein	C.G.	S.X.	Please select
0.04	6e-1	34	Zea mays	ZmAffx.964.1.S1_at	AI833796	-	-	2e+0	At4g12760	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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