Gene omics information

Query gene ID	Contig13943_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig13943_s_at	Contig13943	-	-	4e+0	At4g00880	auxin-responsive family protein	S.X.	H.G.	Please select
0.67	84.7	HVSMEf0015C12f_at	HVSMEf0015C12f	-	-	3e+0	At3g26060	ATPRX Q	S.X.	H.G.	Please select
0.67	84.7	Contig13141_at	Contig13141	-	-	1e-5	At4g25770	unknown protein	S.X.	H.G.	Please select
0.67	84.7	ChlorContig14_at	ChlorContig14	-	-	4e-157	Atcg00280	-	S.X.	H.G.	Please select
0.57	74.9	Contig16735_at	Contig16735	-	-	6e+0	At5g42053	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig22083_at	Contig22083	-	-	2e+0	At5g65480	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.3	99.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.5	96.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	1e-143	508	Contig13944_at	Contig13944	-	-	3e-1	At2g47210	myb family transcription factor	C.G.	S.X.	Please select
0.70	3e-98	357	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	C.G.	S.X.	Please select
0.02	5e-1	34	Contig8989_at	Contig8989	-	-	1e-1	At5g49230	HRB1 (HYPERSENSITIVE TO RED AND BLUE)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig13542_at	Contig13542	-	-	1e-1	At3g46070	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11358_at	Contig11358	-	-	4e-2	At1g11690	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	rbags1m23_at	rbags1m23	-	-	3e-1	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	C.G.	S.X.	Please select
0.01	8e+0	30	Contig8980_at	Contig8980	-	-	8e-4	At1g63980	D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.02	8e+0	30	Contig25604_at	Contig25604	-	-	2e+0	At3g58130	N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related	C.G.	S.X.	Please select
0.03	8e+0	30	Contig19265_at	Contig19265	-	-	5e+0	At5g53742	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At4g00880	827989	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	HgAffx.15530.1.S1_at	CB281464	-	-	1e+1	At5g44572	unknown protein	C.G.	S.X.	Please select
0.06	4e-26	119	Oryza sativa	Os08g0178100	AK101717.1	-	Pep3/Vps18/deep orange domain containing protein	1e-10	At1g12470	Pep3/Vps18/deep orange family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.64104.1.S1_at	AJ774248	hypothetical protein	-	9e-1	At1g12064	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.25049.1.S1_at	CA707674	-	-	3e+0	At3g29170	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1622538_at	CF210831	hypothetical protein LOC100263811	-	1e+0	At2g07110	-	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	ZmAffx.964.1.S1_at	AI833796	-	-	2e+0	At4g12760	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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