Gene omics information

Query gene ID	Contig1391_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig1391_at	Contig1391	-	-	0	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select
0.43	56.4	HVSMEk0019C04r2_at	HVSMEk0019C04r2	-	-	1e+1	At5g15725	unknown protein	S.X.	H.G.	Please select
0.08	6.5	Contig6576_s_at	Contig6576	-	-	6e-6	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.04	3.4	Contig10535_at	Contig10535	-	-	1e-4	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select
0.02	1.8	Contig19167_s_at	Contig19167	-	-	1e+1	At5g55550	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.01	1.1	Contig10661_at	Contig10661	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.5	99.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
12.3	99.4	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
12.0	99.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
9.8	99.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
9.7	99.0	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
7.9	98.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
7.6	98.6	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.1	98.4	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.1	98.4	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.6	98.2	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	0	1011	Contig1390_3_s_at	Contig1390_3	actin	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.62	0	1011	Contig1390_M_at	Contig1390_M	actin	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.62	0	1011	Contig1390_5_at	Contig1390_5	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.61	0	839	Contig1394_at	Contig1394	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.61	0	839	Contig1394_s_at	Contig1394	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.62	0	773	Contig1389_s_at	Contig1389	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.61	0	751	Contig1397_at	Contig1397	-	-	0	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.47	4e-109	395	Contig1393_at	Contig1393	-	-	1e-42	At3g46520	ACT12 (ACTIN-12)	C.G.	S.X.	Please select
0.25	2e-61	236	Contig5177_s_at	Contig5177	-	-	3e-38	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	787	Arabidopsis thaliana	At5g09810	830841	ACT7 (ACTIN 7)	Member of Actin gene family.Mutants are defective in germination and root growth.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.59	4e-151	535	Glycine max	Gma.6406.1.S1_at	CD394756	-	-	0	At2g37620	ACT1 (ACTIN 1)	C.G.	S.X.	Please select
0.67	0	1380	Oryza sativa	Os10g0510000	AK101613.1	-	Actin 7 (Actin 2)	0	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.56	0	914	Populus trichocarpa	PtpAffx.1258.4.S1_s_at	CF232778	actin 1 /// actin 9	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.82	0	2198	Triticum aestivum	Ta.1098.1.S1_at	BJ229397	-	-	1e-169	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.52	0	801	Vitis vinifera	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.69	0	1513	Zea mays	Zm.16513.9.A1_a_at	CD444572	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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