Gene omics information

Query gene ID	Contig1390_M_at
Gene name	actin
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig1390_M_at	Contig1390_M	actin	-	0	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select
0.63	80.3	Contig13636_at	Contig13636	-	-	9e-3	At2g25650	DNA-binding storekeeper protein-related	S.X.	H.G.	Please select
0.63	80.3	HV_CEa0003B14r2_at	HV_CEa0003B14r2	-	-	8e-1	At4g24026	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig3066_s_at	Contig3066	-	-	3e+0	At3g05950	germin-like protein, putative	S.X.	H.G.	Please select
0.40	53.1	Contig20962_at	Contig20962	-	-	9e-9	At2g33820	MBAC1	S.X.	H.G.	Please select
0.40	53.1	Contig5337_at	Contig5337	-	-	7e-1	At5g64250	2-nitropropane dioxygenase family / NPD family	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.1	94.1	GSM68889	3 h control replicate 1	GSE3097	Barley1 salinity stress study
3.0	93.8	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM71150	OWB-R unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	2841	Contig1390_3_s_at	Contig1390_3	actin	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.93	0	2841	Contig1390_5_at	Contig1390_5	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.60	0	1035	Contig1394_at	Contig1394	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.60	0	1035	Contig1394_s_at	Contig1394	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.62	0	1011	Contig1391_at	Contig1391	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.60	0	847	Contig1397_at	Contig1397	-	-	0	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.60	0	827	Contig1389_s_at	Contig1389	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.55	4e-177	621	Contig1393_at	Contig1393	-	-	1e-42	At3g46520	ACT12 (ACTIN-12)	C.G.	S.X.	Please select
0.24	6e-114	410	HD01E23w_s_at	HD01E23w	actin	-	7e+0	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	745	Arabidopsis thaliana	At5g09810	830841	ACT7 (ACTIN 7)	Member of Actin gene family.Mutants are defective in germination and root growth.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.56	2e-147	523	Glycine max	Gma.6406.1.S1_at	CD394756	-	-	0	At2g37620	ACT1 (ACTIN 1)	C.G.	S.X.	Please select
0.66	0	1528	Oryza sativa	Os05g0106600	AK103340.1	-	Non-muscle actin	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.54	0	850	Populus trichocarpa	PtpAffx.1258.4.S1_s_at	CF232778	actin 1 /// actin 9	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	0	1098	Triticum aestivum	Ta.28733.2.S1_x_at	CK209893	-	-	9e-69	At2g37620	ACT1 (ACTIN 1)	C.G.	S.X.	Please select
0.49	2e-180	630	Vitis vinifera	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.63	0	1271	Zea mays	Zm.16513.6.A1_at	AI834422	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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