CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig1390_3_s_at

Gene name actin

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.62 79.1 Contig1390_3_s_at Contig1390_3 actin - 0 At5g09810 ACT7 (ACTIN 7) S.X. H.G.
0.71 87.1 Contig6587_s_at Contig6587 - - 1e-4 At3g52470 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.67 84.7 rbags16i08_s_at rbags16i08 - - 8e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) S.X. H.G.
0.67 84.7 Contig14353_at Contig14353 - - 9e-3 At1g49950 DNA-binding protein, putative S.X. H.G.
0.67 84.7 Contig2750_s_at Contig2750 - - 4e-15 At2g33150 PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3) S.X. H.G.
0.67 84.7 Contig2748_at Contig2748 - - 1e-2 At4g20130 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) S.X. H.G.
0.67 84.7 Contig24888_at Contig24888 - - 1e+0 At2g26940 zinc finger (C2H2 type) family protein S.X. H.G.
0.50 66.9 Contig26180_at Contig26180 - - 4e+0 At5g05690 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) S.X. H.G.
0.48 63.2 Contig67_at Contig67 - - 4e-40 At2g37600 60S ribosomal protein L36 (RPL36A) S.X. H.G.
0.43 56.4 HVSMEh0086G04r2_at HVSMEh0086G04r2 - - 3e+0 At4g03280 PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.0 93.8 GSM68889 3 h control replicate 1 GSE3097 Barley1 salinity stress study
2.8 93.1 GSM68891 3 h control replicate 3 GSE3097 Barley1 salinity stress study
2.8 93.1 GSM68895 8 h control replicate 1 GSE3097 Barley1 salinity stress study
2.6 92.3 GSM68896 8 h control replicate 2 GSE3097 Barley1 salinity stress study
2.6 92.3 GSM68893 3 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
2.6 92.3 GSM71148 OWB-R unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
2.6 92.3 GSM419974 Lemma_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
2.6 92.3 GSM440959 Control lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
2.6 92.3 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.6 92.3 GSM419973 Lemma_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 0 2841 Contig1390_M_at Contig1390_M actin - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.93 0 2841 Contig1390_5_at Contig1390_5 - - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.60 0 1035 Contig1394_at Contig1394 - - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.60 0 1035 Contig1394_s_at Contig1394 - - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.62 0 1011 Contig1391_at Contig1391 - - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.60 0 847 Contig1397_at Contig1397 - - 0 At3g12110 ACT11 (actin-11) C.G. S.X.
0.60 0 827 Contig1389_s_at Contig1389 - - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.55 4e-177 621 Contig1393_at Contig1393 - - 1e-42 At3g46520 ACT12 (ACTIN-12) C.G. S.X.
0.24 6e-114 410 HD01E23w_s_at HD01E23w actin - 7e+0 At5g49510 PDF3 (PREFOLDIN 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.68 0 745 Arabidopsis thaliana At5g09810 830841 ACT7 (ACTIN 7) Member of Actin gene family.Mutants are defective in germination and root growth. - - - C.G. S.X.
0.56 2e-147 523 Glycine max Gma.6406.1.S1_at CD394756 - - 0 At2g37620 ACT1 (ACTIN 1) C.G. S.X.
0.66 0 1528 Oryza sativa Os05g0106600 AK103340.1 - Non-muscle actin 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.54 0 850 Populus trichocarpa PtpAffx.1258.4.S1_s_at CF232778 actin 1 /// actin 9 - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.77 0 1098 Triticum aestivum Ta.28733.2.S1_x_at CK209893 - - 9e-69 At2g37620 ACT1 (ACTIN 1) C.G. S.X.
0.49 2e-180 630 Vitis vinifera 1606368_s_at CF208516 actin 1 - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.63 0 1271 Zea mays Zm.16513.6.A1_at AI834422 hypothetical protein LOC100191561 - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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