CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13884_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 Contig13884_at Contig13884 - - 3e-5 At2g37510 RNA-binding protein, putative S.X. H.G.
0.55 72.0 Contig11177_at Contig11177 - - 5e-1 At5g53730 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.53 69.7 Contig26369_at Contig26369 - - 4e+0 At4g02620 vacuolar ATPase subunit F family protein S.X. H.G.
0.53 69.7 Contig21865_at Contig21865 - - 9e-1 At5g45870 Bet v I allergen family protein S.X. H.G.
0.50 66.9 Contig13428_at Contig13428 - - 6e-5 At3g17160 unknown protein S.X. H.G.
0.50 66.9 Contig14949_at Contig14949 - - 3e-2 At3g19100 calcium-dependent protein kinase, putative / CDPK, putative S.X. H.G.
0.40 53.1 Contig13965_at Contig13965 - - 7e+0 At5g55056 unknown protein S.X. H.G.
0.33 42.6 Contig4910_at Contig4910 - - 3e+0 At5g09280 pectate lyase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.9 98.7 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
6.4 98.1 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
6.4 98.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.0 97.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.6 97.7 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM282027 Malting_day1_Legacy_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Contig8338_at Contig8338 - - 2e+0 At4g33610 glycine-rich protein C.G. S.X.
0.01 2e-1 36 Contig7325_at Contig7325 - - 2e-14 At3g49080 ribosomal protein S9 family protein C.G. S.X.
0.02 2e-1 36 Contig16487_at Contig16487 - - 3e-1 At5g62320 ATMYB99 (MYB DOMAIN PROTEIN 99) C.G. S.X.
0.03 2e-1 36 Contig3663_at Contig3663 - - 2e+0 At3g04640 glycine-rich protein C.G. S.X.
0.01 8e-1 34 Contig1966_at Contig1966 - - 2e-1 At4g38320 HHP5 (heptahelical protein 5) C.G. S.X.
0.02 8e-1 34 Contig4743_at Contig4743 - - 3e-21 At5g11060 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) C.G. S.X.
0.02 8e-1 34 Contig4296_at Contig4296 - - 5e-38 At1g21720 PBC1 (PROTEASOME BETA SUBUNIT C1) C.G. S.X.
0.03 8e-1 34 HVSMEg0009L10r2_at HVSMEg0009L10r2 - - 1e+0 At2g18670 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 8e-1 34 Contig16820_at Contig16820 - - 2e+0 At1g15415 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-5 50 Arabidopsis thaliana At2g37510 818327 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA - - - C.G. S.X.
0.15 4e-2 40 Glycine max Gma.13724.1.S1_at CD403850 - - 2e-3 At2g37510 RNA-binding protein, putative C.G. S.X.
0.45 2e-78 293 Oryza sativa OsAffx.12889.1.S1_s_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa Ptp.7524.1.S1_at DN485932 hypothetical protein - 1e-4 At5g06210 RNA-binding protein, putative C.G. S.X.
0.77 0 749 Triticum aestivum Ta.25561.1.S1_at CD453588 - - 3e-5 At2g37510 RNA-binding protein, putative C.G. S.X.
0.14 6e-16 83 Vitis vinifera 1617861_at CB340880 hypothetical protein LOC100258495 - 3e-5 At2g37510 RNA-binding protein, putative C.G. S.X.
0.06 1e-2 40 Zea mays Zm.2397.1.A1_at AY104240.1 nucleolin - 2e+0 At1g64710 alcohol dehydrogenase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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