Gene omics information

Query gene ID	Contig13883_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig13883_at	Contig13883	-	-	2e+0	At3g17140	invertase inhibitor-related	S.X.	H.G.	Please select
0.73	88.7	Contig17168_at	Contig17168	-	-	1e+0	At4g27250	dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family	S.X.	H.G.	Please select
0.46	61.0	Contig13374_at	Contig13374	-	-	2e+0	At5g18420	unknown protein	S.X.	H.G.	Please select
0.25	28.9	Contig10456_at	Contig10456	-	-	1e+1	At5g19473	-	S.X.	H.G.	Please select
0.21	22.6	Contig8874_at	Contig8874	-	-	3e-2	At2g36680	-	S.X.	H.G.	Please select
0.10	8.4	Contig9155_s_at	Contig9155	-	-	1e+0	At5g52660	myb family transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.3	99.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
16.1	99.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.9	99.6	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
14.8	99.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.4	99.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.3	99.3	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.1	99.2	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.3	99.1	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.1	98.9	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.6	98.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	6e-5	48	HI01M23w_at	HI01M23w	-	-	6e+0	At4g22890	PGR5-LIKE A	C.G.	S.X.	Please select
0.03	3e-3	42	Contig23168_at	Contig23168	-	-	4e-3	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	C.G.	S.X.	Please select
0.02	1e-2	40	Contig7490_at	Contig7490	-	-	2e-17	At4g28480	DNAJ heat shock family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig4395_at	Contig4395	-	-	3e-1	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig6092_at	Contig6092	-	-	2e-54	At2g42880	ATMPK20	C.G.	S.X.	Please select
0.01	8e-1	34	Contig4811_at	Contig4811	-	-	5e-3	At2g45750	dehydration-responsive family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig13848_at	Contig13848	-	-	4e-1	At1g10970	ZIP4 (ZINC TRANSPORTER 4 PRECURSOR)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig10891_s_at	Contig10891	-	-	7e-1	At3g50695	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig10891_at	Contig10891	-	-	7e-1	At3g50695	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g17140	820971	invertase inhibitor-related	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-14	81	Glycine max	Gma.1563.2.S1_at	BU083177	-	-	4e-12	At5g16650	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.41	8e-109	395	Oryza sativa	Os02g0693200	AK071581.1	-	DnaJ homolog subfamily B member 5 (Heat shockprotein Hsp40-3) (Heat shock protein cognate 40) (Hsc40)(Hsp40-2)	2e+0	At3g44428	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-3	44	Populus trichocarpa	PtpAffx.201954.1.S1_s_at	pmrna3896	hypothetical protein	-	7e-1	At1g63206	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	0	906	Triticum aestivum	Ta.4905.1.S1_at	BQ166693	-	-	9e-5	At5g16650	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.17	1e-20	99	Vitis vinifera	1619434_at	CD714954	similar to DNAJ heat shock N-terminal domain-containing protein	-	2e-34	At5g16650	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.6681.1.A1_at	BG837073	wound induced protein	-	3e-1	At4g28240	wound-responsive protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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