CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13867_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig13867_s_at Contig13867 - - 6e-3 At2g02840 - S.X. H.G.
0.83 94.0 Contig13869_at Contig13869 - - 7e-10 At1g54610 protein kinase family protein S.X. H.G.
0.77 90.8 HVSMEi0002D23r2_at HVSMEi0002D23r2 - - 4e-2 At2g06420 unknown protein S.X. H.G.
0.77 90.8 Contig2446_at Contig2446 - - 1e+0 At2g37480 unknown protein S.X. H.G.
0.73 88.7 Contig26522_at Contig26522 - - 8e-2 At2g34850 MEE25 (maternal effect embryo arrest 25) S.X. H.G.
0.67 84.7 Contig21939_at Contig21939 - - 5e+0 At5g17523 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.6 99.9 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
42.8 99.9 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
39.6 99.9 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
38.4 99.9 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
35.7 99.9 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
32.7 99.9 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
31.9 99.9 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
31.5 99.9 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
26.0 99.8 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
25.6 99.8 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 1459 Contig13867_at Contig13867 - - 6e-3 At2g02840 - C.G. S.X.
0.47 3e-120 430 Contig9949_at Contig9949 - - 7e-1 At2g27360 lipase, putative C.G. S.X.
0.51 3e-77 287 Contig9950_s_at Contig9950 - - 3e-1 At2g27360 lipase, putative C.G. S.X.
0.51 3e-77 287 Contig9950_at Contig9950 - - 3e-1 At2g27360 lipase, putative C.G. S.X.
0.03 5e-5 48 Contig10693_at Contig10693 - - 7e-1 At1g28640 GDSL-motif lipase, putative C.G. S.X.
0.02 3e-3 42 Contig7253_at Contig7253 - - 2e-1 At1g28650 lipase, putative C.G. S.X.
0.04 5e-2 38 HV_CEb0017D17f_at HV_CEb0017D17f - - 4e+0 At4g30660 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
0.04 5e-2 38 Contig3023_s_at Contig3023 - - 2e-1 At3g49850 TRB3 (TELOMERE REPEAT BINDING FACTOR 3) C.G. S.X.
0.04 2e-1 36 EBro04_SQ004_O07a_at EBro04_SQ004_O07a - - 4e+0 At5g10946 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-3 42 Arabidopsis thaliana At2g02840 814815 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 1e-1 38 Glycine max GmaAffx.53576.1.S1_at BE475601 - - 2e-1 At1g73390 - C.G. S.X.
0.19 2e-7 57 Oryza sativa Os01g0216500 NM_188456.1 - Lipolytic enzyme, G-D-S-L family protein 2e-6 At1g28600 lipase, putative C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.60648.1.S1_at CK103977 - - 5e+0 At5g14440 - C.G. S.X.
0.19 2e-24 113 Triticum aestivum Ta.582.1.S1_at BE488361 - - 2e-1 At1g75720 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1618564_at CD004713 - - 1e+0 At3g25011 unknown protein C.G. S.X.
0.05 3e-3 42 Zea mays Zm.10141.1.A1_at AY108995.1 esterase - 2e+0 At4g38690 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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