Gene omics information

Query gene ID	Contig13834_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig13834_at	Contig13834	-	-	1e-1	At5g04660	CYP77A4	S.X.	H.G.	Please select
0.83	94.0	HV_CEa0013O16r2_at	HV_CEa0013O16r2	-	-	3e-2	At2g34980	SETH1	S.X.	H.G.	Please select
0.80	92.5	Contig1947_at	Contig1947	-	-	2e-5	At5g13510	ribosomal protein L10 family protein	S.X.	H.G.	Please select
0.43	56.4	Contig5440_at	Contig5440	-	-	6e-4	At4g28280	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig14634_at	Contig14634	-	-	8e-1	At5g26790	unknown protein	S.X.	H.G.	Please select
0.19	19.6	Contig19439_at	Contig19439	-	-	1e-4	At2g02040	PTR2 (PEPTIDE TRANSPORTER 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
62.7	100.0	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
53.0	100.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
36.8	99.9	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
18.2	99.7	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.2	99.5	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
13.3	99.4	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.9	99.4	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.5	99.3	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.6	98.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-3	42	Contig18990_at	Contig18990	-	-	7e+0	At5g40600	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig5737_at	Contig5737	-	-	2e-1	At2g36261	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig5737_s_at	Contig5737	-	-	2e-1	At2g36261	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig6931_at	Contig6931	-	-	8e-1	At2g04480	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8631_at	Contig8631	-	-	1e-5	At5g17820	peroxidase 57 (PER57) (P57) (PRXR10)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig8632_at	Contig8632	-	-	9e-1	At5g02260	ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig12571_at	Contig12571	-	-	3e+0	At5g37520	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig6844_at	Contig6844	-	-	9e-3	At3g17160	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig16659_at	Contig16659	-	-	1e-6	At4g01810	protein transport protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	38	Arabidopsis thaliana	At5g04660	830343	CYP77A4	encodes a protein with cytochrome P450 domain	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.66239.1.S1_at	AW101381	-	-	8e+0	At5g60820	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.18	1e-52	208	Oryza sativa	Os04g0407900	AK064758.1	-	Cytochrome P450 77A2 (EC 1.14.-.-) (CYPLXXVIIA2)(P-450EG5)	3e-1	At5g04660	CYP77A4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e-3	42	Populus trichocarpa	PtpAffx.223345.1.S1_at	pmrna41290	hypothetical protein	-	1e+1	At5g27780	auxin-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.90	0	793	Triticum aestivum	Ta.9967.2.S1_s_at	CA714915	-	-	1e-1	At5g04660	CYP77A4	C.G.	S.X.	Please select
0.03	8e+0	30	Vitis vinifera	1617526_s_at	CB972978	hypothetical protein LOC100250396	-	8e-1	At2g10920	unknown protein	C.G.	S.X.	Please select
0.42	1e-116	418	Zea mays	Zm.18561.1.A1_at	CO517421	hypothetical protein LOC100193602	-	1e-1	At5g04660	CYP77A4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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