Gene omics information

Query gene ID	Contig13815_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig13815_at	Contig13815	-	-	2e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.46	61.0	Contig14434_at	Contig14434	-	-	1e-1	At2g41260	M17	S.X.	H.G.	Please select
0.44	58.9	Contig5985_at	Contig5985	-	-	1e-3	At3g50590	nucleotide binding	S.X.	H.G.	Please select
0.36	47.1	Contig1300_x_at	Contig1300	-	-	2e-168	At2g36530	LOS2	S.X.	H.G.	Please select
0.20	21.1	Contig23513_at	Contig23513	-	-	7e+0	At5g49260	unknown protein	S.X.	H.G.	Please select
0.07	5.8	Contig11661_at	Contig11661	-	-	2e-28	At4g21110	G10 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	99.9	GSM71157	Steptoe stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
28.2	99.8	GSM71159	Steptoe stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
28.1	99.8	GSM71158	Steptoe stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
24.9	99.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
20.6	99.7	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
20.3	99.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
18.5	99.7	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
17.9	99.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.6	99.6	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
15.5	99.6	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-4	44	baal21h16_s_at	baal21h16	-	-	4e-6	At4g38230	CPK26	C.G.	S.X.	Please select
0.03	9e-4	44	Contig3452_at	Contig3452	-	-	1e-1	At1g11700	unknown protein	C.G.	S.X.	Please select
0.04	9e-4	44	baal21h16_at	baal21h16	-	-	4e-6	At4g38230	CPK26	C.G.	S.X.	Please select
0.03	3e-3	42	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.02	3e-3	42	Contig10421_at	Contig10421	-	-	2e+0	At1g34380	5'-3' exonuclease family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig2465_at	Contig2465	-	-	1e-135	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	C.G.	S.X.	Please select
0.02	1e-2	40	Contig12329_at	Contig12329	-	-	8e+0	At5g14010	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig11369_at	Contig11369	-	-	3e-12	At3g24550	ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1)	C.G.	S.X.	Please select
0.03	1e-2	40	Contig10915_s_at	Contig10915	-	-	4e-1	At5g53140	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g50130	835078	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	Gma.8227.3.S1_at	CA953304	-	-	1e-3	At2g26590	adhesion regulating molecule family	C.G.	S.X.	Please select
0.03	9e-1	36	Oryza sativa	OsAffx.9857.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.39272.1.S1_at	BU817676	hypothetical protein	-	3e-4	At3g26100	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	3e-162	571	Triticum aestivum	Ta.5429.1.S1_at	BJ282916	-	-	2e+0	At4g31530	binding / catalytic	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1608043_at	CD802249	hypothetical protein LOC100251928	-	2e-16	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.6913.2.A1_a_at	AI065646	-	-	9e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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