Gene omics information

Query gene ID Contig13808_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5975.8Contig13808_atContig13808--9e-10At2g04270RNEE/G (RNASE E/G-LIKE)S.X.H.G.
0.5369.7Contig1356_s_atContig1356--4e+0At4g02450glycine-rich proteinS.X.H.G.
0.5066.9HB14O12r_atHB14O12r--4e+0At5g24316proline-rich family proteinS.X.H.G.
0.3647.1Contig10922_atContig10922--3e-16At3g48380-S.X.H.G.
0.3342.6Contig1146_atContig1146--8e-3At3g09480histone H2B, putativeS.X.H.G.
0.064.8Contig7768_atContig7768--8e-25At2g45770CPFTSYS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.599.6GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.599.2GSM161200cold treatment rep1GSE6993Barley low temperature stress
9.799.0GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.298.7GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.698.6GSM161221cold treatment rep3GSE6993Barley low temperature stress
7.398.5GSM261062Xantha s-46 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.298.5GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.998.3GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.398.1GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.298.0GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-136Contig6593_s_atContig6593--2e-54At2g07690minichromosome maintenance family protein / MCM family proteinC.G.S.X.
0.024e-136Contig15590_atContig15590--1e+1At4g02250invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.014e-136Contig6675_atContig6675--3e-2At5g15760plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeC.G.S.X.
0.014e-136Contig6592_atContig6592--2e-35At2g07690minichromosome maintenance family protein / MCM family proteinC.G.S.X.
0.012e+034Contig13064_atContig13064--3e-2At4g14723-C.G.S.X.
0.012e+034Contig21437_atContig21437--4e-1At4g15760MO1 (MONOOXYGENASE 1)C.G.S.X.
0.012e+034Contig3478_atContig3478--1e-115At5g05170CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)C.G.S.X.
0.016e+032Contig10043_atContig10043--8e-38At5g13280AK-LYS1 (ASPARTATE KINASE 1)C.G.S.X.
0.016e+032Contig6461_s_atContig6461--7e-17At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.139e-1065Arabidopsis thalianaAt2g04270814965RNEE/G (RNASE E/G-LIKE)Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.---C.G.S.X.
0.021e+036Glycine maxGmaAffx.90142.1.S1_s_atCF805867--1e-9At3g51550FER (FERONIA)C.G.S.X.
0.4101217Oryza sativaOs08g0323600AK067514.1-Glycoside hydrolase, starch-binding domaincontaining protein5e-7At2g04270RNEE/G (RNASE E/G-LIKE)C.G.S.X.
0.092e-1171Populus trichocarpaPtpAffx.211940.1.S1_atpmrna23445hypothetical protein-2e-113At2g04270RNEE/G (RNASE E/G-LIKE)C.G.S.X.
0.8502387Triticum aestivumTa.7502.1.S1_atBT008946.1--4e-3At2g04270RNEE/G (RNASE E/G-LIKE)C.G.S.X.
0.201e-654Vitis vinifera1614432_atBM437777hypothetical protein LOC100256290-5e-60At2g04270RNEE/G (RNASE E/G-LIKE)C.G.S.X.
0.026e-342Zea maysZm.6429.1.A1_atAI834521hypothetical protein LOC100216891-2e-16At2g07690minichromosome maintenance family protein / MCM family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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