Gene omics information

Query gene ID	Contig13805_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig13805_at	Contig13805	-	-	5e-1	At2g40080	ELF4 (EARLY FLOWERING 4)	S.X.	H.G.	Please select
0.73	88.7	Contig20488_at	Contig20488	-	-	3e-1	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	S.X.	H.G.	Please select
0.59	75.8	Contig15003_at	Contig15003	-	-	5e-1	At4g37608	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig22235_at	Contig22235	-	-	2e+1	At5g15560	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig26418_at	Contig26418	-	-	2e+0	At4g32260	ATP synthase family	S.X.	H.G.	Please select
0.33	42.6	Contig20907_at	Contig20907	-	-	2e+0	At4g18425	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
48.6	99.9	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
48.6	99.9	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
13.5	99.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
12.9	99.4	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.9	99.4	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
11.6	99.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.6	99.3	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.1	98.9	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
7.1	98.4	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
6.9	98.3	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	40	Contig3718_s_at	Contig3718	-	-	2e-9	At3g25690	CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig16114_at	Contig16114	-	-	5e-1	At4g33585	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig11148_at	Contig11148	-	-	1e+0	At3g05800	transcription factor	C.G.	S.X.	Please select
0.01	2e-1	36	Contig13793_at	Contig13793	-	-	4e-4	At4g08160	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig13792_s_at	Contig13792	-	-	4e+0	At5g41614	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig5626_s_at	Contig5626	-	-	2e+0	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	EBem04_SQ004_P22_at	EBem04_SQ004_P22	-	-	4e-3	At5g06230	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig2474_at	Contig2474	-	-	2e-1	At1g80240	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	Contig21755_at	Contig21755	-	-	7e-2	At2g40320	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At2g40080	818596	ELF4 (EARLY FLOWERING 4)	Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.CL1002Contig1_s_at	PsAffx.CL1002Contig1	-	-	4e+0	At4g35725	unknown protein	C.G.	S.X.	Please select
0.48	9e-106	385	Oryza sativa	Os06g0234600	AK063415.1	-	Protein of unknown function DUF231 domaincontaining protein	3e+0	At5g40180	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-2	40	Populus trichocarpa	PtpAffx.218222.1.S1_at	pmrna33772	hypothetical protein	-	1e-2	At2g28671	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	Ta.27021.1.A1_at	CD452465	-	-	4e-1	At3g55990	ESK1 (ESKIMO 1)	C.G.	S.X.	Please select
0.02	1e-1	36	Vitis vinifera	1608404_at	CF519044	-	-	4e+0	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	C.G.	S.X.	Please select
0.05	4e-6	52	Zea mays	Zm.12160.1.S1_at	CO532241	hypothetical protein LOC100277263	-	5e-2	At5g40180	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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