Gene omics information

Query gene ID	Contig13783_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.63	80.3	Contig14599_at	Contig14599	-	-	3e-2	At3g17160	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select
0.47	62.2	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.22	24.2	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.4	99.9	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
32.7	99.9	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
30.9	99.9	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
30.9	99.9	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
28.0	99.8	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
21.5	99.8	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
20.2	99.7	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
20.0	99.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
16.9	99.6	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.0	99.6	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-5	48	Contig10167_at	Contig10167	-	-	4e-2	At5g26170	WRKY50	C.G.	S.X.	Please select
0.02	1e-2	40	Contig4797_at	Contig4797	-	-	2e+0	At3g02480	ABA-responsive protein-related	C.G.	S.X.	Please select
0.07	1e-2	40	Contig23219_at	Contig23219	-	-	1e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.06	5e-2	38	Contig64_at	Contig64	-	-	2e-2	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.02	5e-2	38	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	C.G.	S.X.	Please select
0.08	5e-2	38	Z48624_x_at	Z48624	-	-	5e-4	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.02	5e-2	38	Contig15149_at	Contig15149	-	-	3e-3	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	5e-2	38	Contig1810_at	Contig1810	-	-	6e-31	At5g39850	40S ribosomal protein S9 (RPS9C)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig3900_at	Contig3900	-	-	5e-2	At2g27420	cysteine proteinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-1	36	Arabidopsis thaliana	At2g41225	6240955	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.C22000021_at	PsAffx.C22000021	-	-	4e+0	At4g05070	unknown protein	C.G.	S.X.	Please select
0.13	2e-11	71	Oryza sativa	Os10g0455100	CA758094	-	Eggshell protein family protein	9e-2	At5g39140	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.69503.1.A1_at	CV254873	-	-	1e-7	At1g53640	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	714	Triticum aestivum	Ta.16709.1.S1_at	CA611308	-	-	4e-1	At4g11870	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Vitis vinifera	1611444_at	CF211599	-	-	2e-1	At2g40310	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zea mays	Zm.9790.1.A1_at	CO523101	hypothetical protein LOC100192495	-	1e+0	At2g41225	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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