Gene omics information

Query gene ID	Contig13776_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	89.8	Contig13776_at	Contig13776	-	-	4e-10	At1g77760	NIA1 (NITRATE REDUCTASE 1)	S.X.	H.G.	Please select
0.62	79.1	Contig26093_at	Contig26093	-	-	3e-1	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	S.X.	H.G.	Please select
0.52	68.3	Contig19776_at	Contig19776	-	-	1e+0	At2g37600	60S ribosomal protein L36 (RPL36A)	S.X.	H.G.	Please select
0.50	66.9	Contig20448_at	Contig20448	-	-	2e-6	At4g39010	AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18)	S.X.	H.G.	Please select
0.50	66.9	HV_CEb0006G02r2_at	HV_CEb0006G02r2	-	-	2e+1	At1g04550	IAA12 (AUXIN-INDUCED PROTEIN 12)	S.X.	H.G.	Please select
0.45	59.3	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	S.X.	H.G.	Please select
0.44	58.9	HT10K14u_at	HT10K14u	-	-	1e-6	At1g09230	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.42	55.2	Contig23308_at	Contig23308	-	-	1e+0	At3g13820	F-box family protein	S.X.	H.G.	Please select
0.39	50.5	HU05N01u_at	HU05N01u	-	-	1e+0	At5g19830	aminoacyl-tRNA hydrolase	S.X.	H.G.	Please select
0.36	47.1	Contig3976_at	Contig3976	-	-	5e+0	At5g33330	RNase H domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
65.3	100.0	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
65.3	100.0	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
24.0	99.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
22.6	99.8	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.2	99.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
13.6	99.5	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.9	98.9	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
8.8	98.9	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
8.4	98.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
7.5	98.6	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	2e-84	313	Contig8716_at	Contig8716	-	-	3e-5	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select
0.09	1e-73	278	EBma05_SQ003_C16_s_at	EBma05_SQ003_C16	-	-	1e+0	At1g12660	-	C.G.	S.X.	Please select
0.01	2e-4	48	Contig2347_at	Contig2347	-	-	3e-4	At3g18070	BGLU43 (BETA GLUCOSIDASE 43)	C.G.	S.X.	Please select
0.01	3e-3	44	Contig1019_at	Contig1019	-	-	2e-79	At2g39730	RCA (RUBISCO ACTIVASE)	C.G.	S.X.	Please select
0.01	1e-2	42	Contig694_at	Contig694	-	-	5e-6	At1g32900	starch synthase, putative	C.G.	S.X.	Please select
0.01	1e-2	42	Contig18848_at	Contig18848	-	-	1e-1	At4g36780	transcription regulator	C.G.	S.X.	Please select
0.01	2e-1	38	HVSMEk0003I10r2_x_at	HVSMEk0003I10r2	-	-	2e+1	At5g44730	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.01	2e-1	38	Contig1075_at	Contig1075	-	-	7e+0	At4g36500	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	38	Contig7101_at	Contig7101	-	-	9e-1	At5g19485	transferase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e-10	67	Arabidopsis thaliana	At1g77760	844112	NIA1 (NITRATE REDUCTASE 1)	Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus, and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD, heme iron (cytochrome B-557), and molybdenum-pterin.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	1e-23	113	Glycine max	Gma.1221.1.S1_s_at	L23854.1	nitrate reductase	-	4e-10	At1g77760	NIA1 (NITRATE REDUCTASE 1)	C.G.	S.X.	Please select
0.76	0	1762	Oryza sativa	Os02g0770800	AK102178.1	-	Nitrate reductase [NAD(P)H] (EC 1.7.1.2)	5e-16	At1g77760	NIA1 (NITRATE REDUCTASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	4e-26	121	Populus trichocarpa	PtpAffx.102478.1.A1_at	AJ770564	hypothetical protein	-	1e-3	At1g77760	NIA1 (NITRATE REDUCTASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	2e-64	248	Triticum aestivum	Ta.5633.1.S1_a_at	BG904383	-	-	3e-4	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select
0.08	7e-37	155	Vitis vinifera	1615159_s_at	CD711821	similar to nitrate reductase	-	3e-26	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select
0.48	7e-81	301	Zea mays	Zm.1826.1.A1_at	AW461127	nitrate reductase	-	8e-21	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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