CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13749_x_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig13749_x_at Contig13749 - - 1e+0 At1g64295 F-box family protein-related S.X. H.G.
0.61 78.7 Contig25340_at Contig25340 - - 8e-36 At1g31800 CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3) S.X. H.G.
0.60 77.3 Contig22909_at Contig22909 - - 3e-2 At1g20550 unknown protein S.X. H.G.
0.57 74.9 Contig23200_at Contig23200 - - 6e-6 At3g20810 transcription factor jumonji (jmjC) domain-containing protein S.X. H.G.
0.50 66.9 Contig23202_at Contig23202 - - 3e-5 At5g09320 VPS9B S.X. H.G.
0.44 58.9 Contig13519_at Contig13519 - - 7e-1 At3g14750 unknown protein S.X. H.G.
0.35 45.1 Contig2_s_at Contig2 plasma membrane proton ATPase - 3e-4 At2g07560 AHA6 (Arabidopsis H(+)-ATPase 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.2 99.7 GSM398264 HS41-1_1d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
14.6 99.5 GSM398251 Martin_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
14.2 99.5 GSM68899 8 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
13.2 99.4 GSM68893 3 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
12.5 99.4 GSM68904 27 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study
11.7 99.3 GSM68901 27 h control replicate 1 GSE3097 Barley1 salinity stress study
11.0 99.2 GSM261054 Bonus Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.2 99.0 GSM363465 5 mM B(OH)3 treatment (5B) - rep3 GSE14521 Late response to boron toxicity in barley leaves
7.7 98.6 GSM398250 Martin_0d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.7 98.3 GSM68892 3 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1209 Contig13749_at Contig13749 - - 1e+0 At1g64295 F-box family protein-related C.G. S.X.
0.76 0 801 Contig13747_at Contig13747 - - 3e-2 At5g59270 lectin protein kinase family protein C.G. S.X.
0.86 8e-167 585 Contig13748_s_at Contig13748 - - 1e+0 At5g19170 unknown protein C.G. S.X.
0.05 6e-1 34 Contig16710_at Contig16710 - - 2e+0 At4g21350 PUB8 (PLANT U-BOX 8) C.G. S.X.
0.02 2e+0 32 Contig18449_at Contig18449 - - 2e+0 At5g37640 UBQ9 C.G. S.X.
0.02 2e+0 32 Contig24656_at Contig24656 - - 3e-23 At1g80350 ERH3 (ECTOPIC ROOT HAIR 3) C.G. S.X.
0.01 2e+0 32 Contig7451_at Contig7451 - - 1e-15 At3g51860 CAX3 (CATION EXCHANGER 3) C.G. S.X.
0.03 2e+0 32 Contig3002_s_at Contig3002 - - 3e-5 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) C.G. S.X.
0.02 2e+0 32 Contig3001_at Contig3001 - - 9e-12 At4g27230 HTA2 (histone H2A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At1g64295 842735 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 7e+0 32 Glycine max PsAffx.psHB032xI13f_at PsAffx.psHB032xI13f - - 3e+0 At3g61930 unknown protein C.G. S.X.
0.03 2e-1 38 Oryza sativa Os07g0604600 AK062832.1 - B12D family protein 2e-2 At1g06475 unknown protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.213051.1.S1_x_at pmrna25539 hypothetical protein - 1e-11 At3g26660 LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24) C.G. S.X.
0.25 1e-9 63 Triticum aestivum TaAffx.38017.1.A1_at BJ254833 - - 3e-1 At5g27930 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1616855_at CD003909 - - 9e-15 At5g24010 protein kinase family protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.18808.1.A1_at CO526738 - - 1e+0 At1g02840 SR1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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