CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13746_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 89.5 Contig13746_at Contig13746 - - 8e-10 At1g23540 protein kinase family protein S.X. H.G.
0.63 80.3 Contig13663_at Contig13663 - - 6e-5 At1g13460 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative S.X. H.G.
0.38 49.5 Contig18779_at Contig18779 - - 5e+0 At4g16930 disease resistance protein (TIR-NBS-LRR class), putative S.X. H.G.
0.38 49.5 Contig22351_at Contig22351 - - 2e+0 At3g20020 PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6) S.X. H.G.
0.32 40.3 Contig15431_at Contig15431 - - 2e+0 At4g13660 PRR2 (PINORESINOL REDUCTASE 2) S.X. H.G.
0.29 35.5 Contig1138_at Contig1138 - - 2e-14 At1g07790 HTB1 S.X. H.G.
0.27 32.1 Contig24094_at Contig24094 - - 1e+0 At1g19115 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.4 99.8 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
13.7 99.5 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
11.8 99.3 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
10.9 99.2 GSM440967 Stressed palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
9.8 99.1 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.6 99.0 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
9.0 98.9 GSM419972 Lemma_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
9.0 98.9 GSM440957 Control lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
8.9 98.9 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.6 98.8 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 4e-90 331 Contig11369_at Contig11369 - - 3e-12 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
0.08 1e-9 63 Contig14466_at Contig14466 - - 4e-5 At1g26150 PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10) C.G. S.X.
0.03 3e-4 46 HO12F07S_at HO12F07S - - 3e+0 At5g48170 SLY2 (SLEEPY2) C.G. S.X.
0.07 5e-3 42 Contig17584_at Contig17584 - - 8e-21 At1g26150 PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10) C.G. S.X.
0.02 5e-3 42 Contig21080_at Contig21080 - - 5e+0 At5g46700 TRN2 (TORNADO 2) C.G. S.X.
0.03 5e-3 42 Contig16523_at Contig16523 - - 6e-13 At1g55200 protein kinase family protein C.G. S.X.
0.05 2e-2 40 Contig13522_at Contig13522 - - 4e-17 At4g02630 protein kinase family protein C.G. S.X.
0.03 8e-2 38 Contig20719_at Contig20719 - - 3e-2 At3g17840 RLK902 C.G. S.X.
0.02 8e-2 38 Contig14061_at Contig14061 - - 2e-10 At5g65530 protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 8e-10 65 Arabidopsis thaliana At1g23540 838963 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOBFPVA - - - C.G. S.X.
0.36 2e-29 131 Glycine max GmaAffx.76163.2.S1_at BG511034 GmPERK1 mRNA for putative receptor protein kinase PERK1 - 3e-17 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
0.54 7e-129 462 Oryza sativa Os05g0218400 CB680782 - Protein kinase domain containing protein 4e-18 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
0.29 7e-14 79 Populus trichocarpa PtpAffx.224163.1.S1_s_at pmrna42439 hypothetical protein - 1e-26 At1g52290 protein kinase family protein C.G. S.X.
0.75 0 1245 Triticum aestivum TaAffx.46608.1.S1_at CA638525 - - 3e-8 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1620324_at CB002490 hypothetical protein LOC100243949 - 5e-3 At1g69790 protein kinase, putative C.G. S.X.
0.47 3e-118 424 Zea mays Zm.14465.1.S1_at AY108241.1 hypothetical protein LOC100279274 - 5e-15 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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