Gene omics information

Query gene ID	Contig13743_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig13743_at	Contig13743	-	-	1e+0	At3g61172	LCR8 (Low-molecular-weight cysteine-rich 8)	S.X.	H.G.	Please select
0.57	74.9	Contig17594_at	Contig17594	-	-	2e+0	At4g11300	unknown protein	S.X.	H.G.	Please select
0.57	74.9	Contig13143_s_at	Contig13143	-	-	5e+0	At5g38565	-	S.X.	H.G.	Please select
0.46	61.0	Contig4941_s_at	Contig4941	-	-	3e-2	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	S.X.	H.G.	Please select
0.42	55.2	Contig26418_at	Contig26418	-	-	2e+0	At4g32260	ATP synthase family	S.X.	H.G.	Please select
0.25	28.9	Contig6947_at	Contig6947	-	-	5e-14	At5g45620	26S proteasome regulatory subunit, putative (RPN9)	S.X.	H.G.	Please select
0.22	24.2	Contig13711_at	Contig13711	-	-	2e+0	At3g22942	AGG2 (G-PROTEIN GAMMA SUBUNIT 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.5	96.7	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.1	96.2	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.6	95.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM160815	drought control rep3	GSE6990	Barley drought stress
3.5	95.1	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	EBro08_SQ012_D07_at	EBro08_SQ012_D07	-	-	3e+0	At1g09260	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig4773_at	Contig4773	-	-	8e+0	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig9952_at	Contig9952	-	-	4e-5	At5g44650	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	34	Contig14219_at	Contig14219	-	-	1e+0	At1g04660	glycine-rich protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig9951_s_at	Contig9951	-	-	1e-7	At5g44650	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig4774_s_at	Contig4774	-	-	8e+0	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEg0009K07r2_s_at	HVSMEg0009K07r2	-	-	4e+0	At5g22520	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig15021_at	Contig15021	-	-	2e-1	At5g09450	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig12039_at	Contig12039	beclin 1 protein	-	5e-1	At3g06820	mov34 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At3g61172	3769755	LCR8 (Low-molecular-weight cysteine-rich 8)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.55722.1.S1_at	BM892567	-	-	3e-7	At2g45320	unknown protein	C.G.	S.X.	Please select
0.36	2e-69	264	Oryza sativa	Os01g0887200	AU030566	-	Winged helix DNA-binding domain containing protein	6e-1	At2g11773	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-4	48	Populus trichocarpa	PtpAffx.215584.1.S1_at	pmrna29861	hypothetical protein	-	4e-1	At1g33330	peptide chain release factor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.87	0	991	Triticum aestivum	Ta.25896.1.S1_a_at	CD929905	-	-	5e+0	At2g18300	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.04	1e-1	36	Vitis vinifera	1621929_at	CB968825	-	-	9e-1	At3g16360	AHP4 (HPT PHOSPHOTRANSMITTER 4)	C.G.	S.X.	Please select
0.02	6e-1	34	Zea mays	Zm.9211.1.A1_at	BM334358	-	-	9e-2	At2g18110	elongation factor 1-beta, putative / EF-1-beta, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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