Gene omics information

Query gene ID	Contig13704_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig13704_at	Contig13704	-	-	2e+0	At5g56100	glycine-rich protein / oleosin	S.X.	H.G.	Please select
0.60	77.3	Contig9075_s_at	Contig9075	-	-	1e-1	At5g59990	-	S.X.	H.G.	Please select
0.44	58.9	Contig12085_at	Contig12085	-	-	1e-2	At5g63260	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.43	56.4	HV_CEa0003B14r2_at	HV_CEa0003B14r2	-	-	8e-1	At4g24026	unknown protein	S.X.	H.G.	Please select
0.40	53.1	HVSMEk0016N13r2_at	HVSMEk0016N13r2	-	-	3e-1	At5g03660	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig19683_at	Contig19683	-	-	1e+0	At3g24820	BSD domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.7	99.8	GSM372938	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.5	99.7	GSM261052	Bonus Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
16.1	99.6	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
12.8	99.4	GSM372958	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.9	99.3	GSM261050	Bonus Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.9	99.3	GSM261051	Bonus Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.3	99.1	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.0	98.9	GSM372974	genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.9	98.9	GSM311265	kara_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.9	98.7	GSM372940	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	765	rbasd2c09_s_at	rbasd2c09	-	-	1e+0	At5g56100	glycine-rich protein / oleosin	C.G.	S.X.	Please select
0.40	1e-159	561	Contig26541_at	Contig26541	-	-	1e+0	At5g56100	glycine-rich protein / oleosin	C.G.	S.X.	Please select
0.47	4e-132	470	Contig21141_at	Contig21141	-	-	5e+0	At5g10870	ATCM2 (chorismate mutase 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig9479_s_at	Contig9479	-	-	2e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	C.G.	S.X.	Please select
0.02	8e-1	34	HV_CEa0012J19r2_at	HV_CEa0012J19r2	-	-	2e+1	Atcg00440	-	C.G.	S.X.	Please select
0.01	8e-1	34	Contig8949_at	Contig8949	-	-	4e-28	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig16628_at	Contig16628	-	-	2e+0	At5g02020	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig7169_at	Contig7169	-	-	4e-14	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig16007_at	Contig16007	-	-	2e-4	At5g43810	ZLL (ZWILLE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g56100	835709	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.13471.8.S1_s_at	BI451533	-	-	6e+0	At5g37415	sequence-specific DNA binding / transcription factor	C.G.	S.X.	Please select
0.35	3e-68	260	Oryza sativa	Os09g0548300	CR287093	-	Multi antimicrobial extrusion protein MatE familyprotein	1e+0	At5g23903	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-4	46	Populus trichocarpa	PtpAffx.27712.1.S1_at	CK096276	hypothetical protein	-	2e+0	At2g32150	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	8e-157	553	Triticum aestivum	TaAffx.104885.1.S1_at	CA745262	-	-	2e+0	At3g02950	-	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1606556_at	CF372538	hypothetical protein LOC100249766	-	1e+0	At4g31380	FLP1 (FPF1-LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.18651.1.A1_at	CO521320	hypothetical protein LOC100193552	-	2e+1	At4g18510	CLE2 (CLAVATA3/ESR-RELATED)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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