Gene omics information

Query gene ID	Contig13701_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig13701_at	Contig13701	-	-	3e-12	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	S.X.	H.G.	Please select
0.27	32.1	Contig2103_at	Contig2103	-	-	3e-24	At1g33140	PGY2 (PIGGYBACK2)	S.X.	H.G.	Please select
0.17	16.9	Contig12792_at	Contig12792	-	-	4e-12	At4g38730	unknown protein	S.X.	H.G.	Please select
0.16	15.3	Contig15565_at	Contig15565	-	-	6e+0	At4g22212	-	S.X.	H.G.	Please select
0.15	14.1	Contig23037_at	Contig23037	-	-	5e+0	At4g37235	unknown protein	S.X.	H.G.	Please select
0.09	7.4	Contig10050_s_at	Contig10050	-	-	5e-2	At2g25052	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	99.3	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.8	99.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
7.6	98.6	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4	98.5	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
7.3	98.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.0	98.4	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5	98.2	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
6.1	98.0	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	2e-79	295	Contig10148_at	Contig10148	-	-	2e-22	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please select
0.29	5e-37	155	Contig10767_at	Contig10767	-	-	3e-15	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select
0.03	9e-5	48	Contig20521_at	Contig20521	-	-	4e-4	At1g48210	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	1e-3	44	Contig13733_at	Contig13733	-	-	2e-3	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.02	2e-2	40	Contig9749_at	Contig9749	-	-	2e-14	At1g52310	protein kinase family protein / C-type lectin domain-containing protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig9756_at	Contig9756	-	-	2e-47	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	9e-2	38	Contig13334_at	Contig13334	-	-	2e-1	At1g51620	protein kinase family protein	C.G.	S.X.	Please select
0.03	9e-2	38	Contig12770_at	Contig12770	-	-	2e-4	At3g17410	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Contig15336_at	Contig15336	-	-	3e-2	At5g01850	protein kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-12	73	Arabidopsis thaliana	At3g49670	824129	BAM2 (BARELY ANY MERISTEM 2)	Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	5e-27	123	Glycine max	Gma.2496.1.S1_at	AF244888.1	receptor-like protein kinase 1	-	1e-75	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please select
0.31	2e-113	410	Oryza sativa	Os03g0773700	AK102670.1	-	Receptor-like protein kinase 2	8e-9	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	6e-36	153	Populus trichocarpa	PtpAffx.64361.1.S1_s_at	CV228112	hypothetical protein	-	5e-63	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	0	706	Triticum aestivum	Ta.3983.1.S1_at	CK202188	-	-	4e-11	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select
0.10	1e-14	79	Vitis vinifera	1616189_at	CF511570	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	C.G.	S.X.	Please select
0.28	4e-28	125	Zea mays	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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