Gene omics information

Query gene ID	Contig13652_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	53.1	Contig13652_at	Contig13652	-	-	8e-7	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	S.X.	H.G.	Please select
0.83	94.0	Contig17823_at	Contig17823	-	-	2e+0	At5g52720	metal ion binding	S.X.	H.G.	Please select
0.67	84.7	Contig24303_at	Contig24303	-	-	3e-1	At3g09800	protein binding	S.X.	H.G.	Please select
0.60	77.3	Contig4360_at	Contig4360	-	-	2e-6	At5g61500	ATG3	S.X.	H.G.	Please select
0.43	56.4	Contig16054_at	Contig16054	-	-	4e-1	At1g06830	glutaredoxin family protein	S.X.	H.G.	Please select
0.23	26.1	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.2	99.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
35.1	99.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
26.0	99.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
19.4	99.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.1	99.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.1	99.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.4	99.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.2	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.6	99.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-5	50	Contig9725_at	Contig9725	-	-	2e-10	At3g21620	early-responsive to dehydration protein-related / ERD protein-related	C.G.	S.X.	Please select
0.02	4e-1	36	HW09B23V_at	HW09B23V	-	-	1e+0	At5g28360	ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)	C.G.	S.X.	Please select
0.02	4e-1	36	Contig1429_at	Contig1429	-	-	1e+0	At3g15358	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig23683_at	Contig23683	-	-	5e-1	At4g00200	DNA binding	C.G.	S.X.	Please select
0.01	4e-1	36	Contig9262_at	Contig9262	-	-	2e-19	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig4477_at	Contig4477	-	-	4e-2	At4g10610	CID12	C.G.	S.X.	Please select
0.02	1e+0	34	HV10D22r_at	HV10D22r	-	-	3e+0	At4g19480	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig5729_at	Contig5729	-	-	8e-20	At5g16620	TIC40	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3561_at	Contig3561	-	-	8e-2	At4g29480	mitochondrial ATP synthase g subunit family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	8e-7	56	Arabidopsis thaliana	At1g32090	840101	early-responsive to dehydration protein-related / ERD protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	3e-4	48	Glycine max	GmaAffx.17436.1.S1_at	BE807315	-	-	4e-9	At3g21620	early-responsive to dehydration protein-related / ERD protein-related	C.G.	S.X.	Please select
0.44	0	900	Oryza sativa	Os10g0579100	AK102587.1	-	Protein of unknown function DUF221 domaincontaining protein	7e-21	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-7	57	Populus trichocarpa	PtpAffx.202486.1.S1_at	pmrna4985	hypothetical protein	-	5e-15	At3g21620	early-responsive to dehydration protein-related / ERD protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	2e-146	519	Triticum aestivum	Ta.3914.1.A1_x_at	BE420282	-	-	1e+0	At5g66260	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1622661_x_at	CF206215.1	-	-	4e+0	Atmg00550	-	C.G.	S.X.	Please select
0.06	1e+0	34	Zea mays	Zm.5272.2.A1_a_at	BE553145	-	-	4e-11	At4g22120	early-responsive to dehydration protein-related / ERD protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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