CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13583_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.1 Contig13583_at Contig13583 - - 6e+0 At3g60780 unknown protein S.X. H.G.
0.70 86.0 Contig25386_at Contig25386 - - 3e+0 At3g26510 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein S.X. H.G.
0.46 61.0 Contig6112_s_at Contig6112 - - 9e-2 At5g27700 structural constituent of ribosome S.X. H.G.
0.24 27.2 Contig7392_at Contig7392 - - 4e-15 At1g31190 IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) S.X. H.G.
0.24 27.2 Contig6844_at Contig6844 - - 9e-3 At3g17160 unknown protein S.X. H.G.
0.23 26.1 Contig16870_at Contig16870 - - 5e-11 At2g36570 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.23 26.1 Contig9529_at Contig9529 - - 4e-4 At3g19910 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.21 22.6 Contig10814_at Contig10814 - - 5e-2 At3g02660 emb2768 (EMBRYO DEFECTIVE 2768) S.X. H.G.
0.20 21.1 Contig6680_at Contig6680 - - 2e-1 At2g23560 MES7 (METHYL ESTERASE 7) S.X. H.G.
0.19 19.6 Contig2550_x_at Contig2550 pathogenesis-related protein 4 - 4e-4 At3g04720 PR4 (PATHOGENESIS-RELATED 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.7 99.9 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
23.6 99.8 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
18.2 99.7 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
15.4 99.6 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
15.3 99.6 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
14.5 99.5 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
12.5 99.4 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
12.3 99.4 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
11.6 99.3 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
11.6 99.3 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-5 48 Contig4687_at Contig4687 - - 6e-10 At3g18170 transferase, transferring glycosyl groups C.G. S.X.
0.02 1e-2 40 Contig4785_at Contig4785 - - 4e-8 At5g03860 MLS (MALATE SYNTHASE) C.G. S.X.
0.02 1e-2 40 Contig4690_s_at Contig4690 - - 2e-3 At3g18170 transferase, transferring glycosyl groups C.G. S.X.
0.02 1e-2 40 Contig4690_at Contig4690 - - 2e-3 At3g18170 transferase, transferring glycosyl groups C.G. S.X.
0.03 5e-2 38 Contig11664_at Contig11664 - - 2e+0 At5g05360 unknown protein C.G. S.X.
0.01 5e-2 38 Contig7293_at Contig7293 - - 1e+1 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
0.03 5e-2 38 Contig4689_at Contig4689 - - 1e+0 At2g12405 unknown protein C.G. S.X.
0.02 2e-1 36 Contig9777_at Contig9777 - - 2e-8 At3g22990 LFR (LEAF AND FLOWER RELATED) C.G. S.X.
0.02 2e-1 36 Contig5841_at Contig5841 - - 4e-6 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At3g60780 825249 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.02 6e-1 36 Glycine max PsAffx.CL183Contig1_at PsAffx.CL183Contig1 - - 2e+0 At5g65410 HB25 (HOMEOBOX PROTEIN 25) C.G. S.X.
0.28 6e-51 202 Oryza sativa Os01g0956300 AK109878.1 - Conserved hypothetical protein 4e+0 At3g13229 unknown protein C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.221471.1.S1_s_at pmrna38371 hypothetical protein - 5e+0 At4g10820 F-box family protein C.G. S.X.
0.04 4e-4 46 Triticum aestivum TaAffx.36401.1.S1_at CA679588 - - 7e-2 At2g12170 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1609682_at CA818437 - - 9e-1 At5g06265 hyaluronan mediated motility receptor-related C.G. S.X.
0.16 7e-7 54 Zea mays Zm.18428.1.A1_at CO523446 hypothetical protein LOC100217259 - 2e+1 At2g10535 LCR29 (Low-molecular-weight cysteine-rich 29) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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