Gene omics information

Query gene ID	Contig1356_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	S.X.	H.G.	Please select
0.60	77.3	Contig6618_at	Contig6618	-	-	4e-1	At5g51180	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig4157_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	S.X.	H.G.	Please select
0.50	66.9	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	S.X.	H.G.	Please select
0.50	66.9	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	S.X.	H.G.	Please select
0.35	45.1	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.0	99.9	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
34.7	99.9	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
32.7	99.9	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
29.4	99.9	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
28.6	99.8	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
23.7	99.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
22.8	99.8	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
22.7	99.8	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
21.0	99.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
15.8	99.6	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	0	734	Contig1357_at	Contig1357	-	-	3e-15	At1g79870	oxidoreductase family protein	C.G.	S.X.	Please select
0.06	5e-4	44	Contig16574_at	Contig16574	-	-	1e+0	At1g26940	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please select
0.02	3e-2	38	Contig8572_s_at	Contig8572	-	-	1e-1	At1g47970	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig816_s_at	Contig816	-	-	6e-4	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.02	5e-1	34	Contig903_at	Contig903	-	-	5e-11	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.05	5e-1	34	HA10H23u_x_at	HA10H23u	-	-	6e-4	At5g14780	FDH (FORMATE DEHYDROGENASE)	C.G.	S.X.	Please select
0.03	5e-1	34	Contig7507_at	Contig7507	-	-	4e-1	At5g19810	proline-rich extensin-like family protein	C.G.	S.X.	Please select
0.01	5e-1	34	Contig4278_at	Contig4278	-	-	7e-2	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Contig1459_at	Contig1459	-	-	1e-14	At5g14780	FDH (FORMATE DEHYDROGENASE)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g02450	828006	glycine-rich protein	F:molecular_function unknown;P:unknown;C:plasma membrane;BMOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	GmaAffx.83377.1.S1_at	BM885268	-	-	5e-3	At1g32280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.15	8e-34	145	Oryza sativa	OsAffx.23220.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.219633.1.S1_at	pmrna35595	hypothetical protein	-	5e+0	At1g44085	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	4e-105	381	Triticum aestivum	Ta.7012.2.S1_at	CA708999	-	-	3e-15	At1g79870	oxidoreductase family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1610629_at	CB345477	-	-	4e+0	At5g06030	self-incompatibility protein-related	C.G.	S.X.	Please select
0.40	2e-28	125	Zea mays	ZmAffx.1073.1.A1_at	AI947671	glyoxylate reductase	-	3e+0	At5g60964	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage